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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G23670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | DBB | ||||||||
Protein Properties | Length: 262aa MW: 27795.1 Da PI: 5.9435 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.4 | 5.2e-07 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ + + ++ fC ++ lC+ C H+ H++ + OPUNC02G23670.1 4 QCDVCAAEAASVFCCADEAALCDACDRRVHRAnklagkHRRLS 46 7*****************************7688888888765 PP | |||||||
2 | zf-B_box | 24 | 8.3e-08 | 61 | 93 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 ++ C+ ++ek+ lfC++++ lC++C + H OPUNC02G23670.1 61 APLCDICQEKRGFLFCKEDRAILCRECDVPVHT 93 689*************************99884 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.054 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.1E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.00E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 6.5E-6 | 4 | 46 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.684 | 59 | 106 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.8E-10 | 59 | 106 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.9E-6 | 61 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.12E-7 | 62 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHRANKLAG KHRRLSLLNP SASGRSPKTT 60 APLCDICQEK RGFLFCKEDR AILCRECDVP VHTTSELTMR HSRYLLTGVR LSSEPAASPA 120 PPSEEENSSS FCCSADDAVP APAPATSHGG SSGSSSISEY LTKTLPGWHV EDFLVDDATA 180 EAAAAATSAN GPCQGVTRIG GLQESAGYPA WMAQQQLCCD SLVAGDAAAA SRERWVPQMY 240 ADQLAAGSKR SRTFASSSYS YW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071507 | 0.0 | AK071507.1 Oryza sativa Japonica Group cDNA clone:J023090D24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623928.1 | 1e-150 | B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 4e-51 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A0E0K2Z5 | 0.0 | A0A0E0K2Z5_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G23670.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 8e-35 | salt tolerance homolog2 |