PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC02G23190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 795aa MW: 86229.8 Da PI: 8.3409 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.6e-19 | 213 | 263 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge OPUNC02G23190.1 213 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 263 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.45E-30 | 212 | 272 | No hit | No description |
PROSITE profile | PS51032 | 22.998 | 213 | 270 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-39 | 213 | 276 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-32 | 213 | 271 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 213 | 271 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-10 | 214 | 225 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-12 | 214 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 236 | 252 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:1.25.40.280 | 4.0E-71 | 449 | 787 | IPR004328 | BRO1 domain |
SMART | SM01041 | 3.7E-57 | 452 | 790 | IPR004328 | BRO1 domain |
PROSITE profile | PS51180 | 30.079 | 452 | 795 | IPR004328 | BRO1 domain |
CDD | cd09246 | 2.41E-136 | 453 | 791 | No hit | No description |
Pfam | PF03097 | 1.0E-65 | 486 | 782 | IPR004328 | BRO1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 795 aa Download sequence Send to blast |
MDAADSGGGA RGRGRRWKGK GVSAAEAQQQ PTPVLEDAPA AAALLRPLKK IRSPDRRLQR 60 SLSSLSSAPA SPGSSSVSNP MSPPAMSLPN QPPSSRHIFP FAYDPSSGAA APRLLPLLQY 120 SSLYPQPLLP QQQPPLQHQQ MISFGSSQQQ QQPQYGAASP LFPPQFLPPE EQQRLLLRYW 180 SEALNLSPRG VRGGALPPSL YQHLLRAPGP PKLYRGVRQR HWGKWVAEIR LPRNRTRLWL 240 GTFDTAEDAA MAYDREAFKL RGENARLNFP DLFLGKGRTG GSGRTSASAA ASCSSSSSSA 300 PPTPDESHTQ QAQPQPRQHR EESSNTEPKP LLSGAEQDGI PEPEPNPQLQ TAEQHVSDGN 360 TAMFQPSVTS GGVWGPADEA WFSAWGPGSS VWDYDMDSAH GLLLQSRLAG EQTSMDYAYN 420 APEVLVAPAS PSPSPVAAVK AQRRAMSRPP SQMLSVPEKK TAAAELFRDR HFFNSAFFTD 480 LREARASLSA PSSQATTQDP SSRRALLLRY HRLLASARDD PCDFDDNLAF TWHDAFRPHL 540 RRTAASLRFE KAAVVFNVGA ASSRTAAAVD RAAEGGVKAA CGEFQRAAGA FRAAGEMMEG 600 EEEVTVDMGT EASAMLERLM LAQAQECCFE RALAAGTSSA ACSKVAKQAA LYYEEAYASL 660 VIPPLQNHFE RSWVAHILLK AALFNAEASY RYAIELHEKT EIGEEIARLQ FGINAIVDAK 720 KAARGAPGSL YDAASRLEQD MNQNLERALN ENNRIYLLRV PAAKLLAPLP AASLVRSVSL 780 SEILDVKTET GNQSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5cru_C | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5cru_D | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mjy_A | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mjy_B | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mjy_C | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mjy_D | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mjz_A | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mjz_B | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk0_A | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk0_C | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk1_A | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk1_B | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk1_C | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk1_D | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk2_A | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk2_B | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk3_A | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk3_B | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk3_C | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
5mk3_D | 9e-25 | 531 | 776 | 95 | 340 | Tyrosine-protein phosphatase non-receptor type 23 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0K2U2 | 0.0 | A0A0E0K2U2_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G23190.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11806 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-36 | ERF family protein |