![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC02G21890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 697aa MW: 73093.8 Da PI: 6.651 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.2 | 1.3e-10 | 295 | 351 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g OPUNC02G21890.1 295 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 351 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 49.7 | 8.9e-16 | 394 | 445 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g OPUNC02G21890.1 394 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 445 89****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.33E-14 | 295 | 361 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-8 | 295 | 351 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.32E-17 | 295 | 361 | No hit | No description |
SMART | SM00380 | 5.8E-22 | 296 | 365 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-11 | 296 | 360 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.108 | 296 | 359 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 297 | 308 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-10 | 394 | 445 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-18 | 394 | 455 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.83E-23 | 394 | 455 | No hit | No description |
SMART | SM00380 | 8.1E-34 | 395 | 459 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.467 | 395 | 453 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-18 | 395 | 454 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 435 | 455 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 697 aa Download sequence Send to blast |
MASANNWLGF SLSGQENPQP HQDSSPPAAI DISGASDFYG LPTSQPTAAD AHLGVAGHHN 60 ASYGIMEAFN RGAQEAQDWN MRGLDYNGGA SELSMLVGSS GGKRAAVEET EPKLEDFLGG 120 NSFVSEQDHA AGGFLFSGVP MASTTNSNSG SNTMELSMIK TWLRNNGQVP GHQPQQQQQP 180 AGAAQQQAQA AHEAAEMSTD ASASSFGCSS DAMGRSNNGA VSAAAGGSSQ SLALSMSTGS 240 HLPIVVAGGG GASGGAAEST SSENKRASGA MDSPGGGAIE AVPRKSIDTF GQRTSIYRGV 300 TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG GYDKEDKAAR AYDLAALKYW GTTTTTNFPI 360 SNYEKELDEM KHMTRQEYIA YLRRNSSGFS RGASKYRGVT RHHQHGRWQA RIGRVAGNKD 420 LYLGTFSTEE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILESSTLPV GGAARRLKEA 480 ADHAEAGATI WRADMDGGVI SGLADVGMGA YASYHHHGWP TIAFQQPSPL AVHYPYGQAP 540 PSRGWCKPEQ DAAVAAAAHS LQDLQQLHLG SAAAAHNFFQ ASSSSTVYNS GSGGGGATSG 600 YQGLGGNAFL MPASTVVADQ GHSSTATNQG STCSYGNEEQ GKLIGYDAMA MTSAGGDPYS 660 TARSAYHQLS QGSASTVSIA RANGYSANWS SPFNGMG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623974.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A0E0K2D6 | 0.0 | A0A0E0K2D6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G21890.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-121 | AP2 family protein |