PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G19290.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 385aa    MW: 40796.2 Da    PI: 6.9937
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G19290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.5e-07175196223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F+r  nL+ H+r H
  OPUNC02G19290.1 175 FCDICGKGFRRDANLRMHMRAH 196
                      6*******************99 PP
2zf-C2H212.40.00047260284123
                      EEETTTT..EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                      y C+ Cg  k+F    +L++H+r +
  OPUNC02G19290.1 260 YACERCGgkKRFAVLADLRSHLRHC 284
                      89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-6171196No hitNo description
PROSITE profilePS5015711.614174196IPR007087Zinc finger, C2H2
SMARTSM003550.0019174196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-6176196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035573222255IPR015880Zinc finger, C2H2-like
SMARTSM0035517260283IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MKKTTTNLLA GAGVSVAPPT ASTAPTLAME VGEPSGAIVG GAGGAGAGGG DGDPRDALLR  60
LVALGDRMAA VRRRIAASIS GESGPLSTSD IHSVSSEISS AAHLVVLNAA SLLSSTVPFP  120
PAPPPPPAPP APAQELPPVV VCVPQELPQE AARGDGDFDV VELDASELLA EHVHFCDICG  180
KGFRRDANLR MHMRAHGDRF KTLDALSRPG QPKPPAGREV RFSCPYAGCN RNRAHRRFRP  240
LKSAVCARNH FRRSHCPKLY ACERCGGKKR FAVLADLRSH LRHCGEEAQW RCSCGTTFSR  300
KDKLFGHLAL FEGHTPAIAE PNKGVVTAAA VAPISMMEEG GVEANCDREE DEEGGFDPEF  360
FQEWMEELRG GAVAPNWCAP SEAGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056990.0AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627485.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A0E0K1F20.0A0A0E0K1F2_ORYPU; Uncharacterized protein
STRINGOPUNC02G19290.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.34e-70C2H2 family protein