PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G19040.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 670aa    MW: 72220.2 Da    PI: 6.7756
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G19040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.4e-18152206256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Le+ F+++++++ +++ +LA++l+L  rqV vWFqNrRa+ k
  OPUNC02G19040.1 152 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTK 206
                      778899***********************************************98 PP
2Homeobox56.16.4e-18484538256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Le+ F+++++++ +++ +LA++l+L  rqV vWFqNrRa+ k
  OPUNC02G19040.1 484 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTK 538
                      778899***********************************************98 PP
3HD-ZIP_I/II124.55e-40152243192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr +l+
  OPUNC02G19040.1 152 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGSLR 243
                      69*************************************************************************************98886 PP
4HD-ZIP_I/II124.55e-40484575192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr +l+
  OPUNC02G19040.1 484 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGSLR 575
                      69*************************************************************************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-17134206IPR009057Homeodomain-like
SuperFamilySSF466892.72E-17143209IPR009057Homeodomain-like
PROSITE profilePS5007117.135148208IPR001356Homeobox domain
SMARTSM003892.1E-16150212IPR001356Homeobox domain
CDDcd000863.22E-16152209No hitNo description
PfamPF000463.0E-15152206IPR001356Homeobox domain
PROSITE patternPS000270183206IPR017970Homeobox, conserved site
SMARTSM003405.1E-17208254IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-10208242IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:1.10.10.602.4E-17466538IPR009057Homeodomain-like
SuperFamilySSF466892.72E-17475541IPR009057Homeodomain-like
PROSITE profilePS5007117.135480540IPR001356Homeobox domain
SMARTSM003892.1E-16482544IPR001356Homeobox domain
PfamPF000463.0E-15484538IPR001356Homeobox domain
CDDcd000863.22E-16484541No hitNo description
PROSITE patternPS000270515538IPR017970Homeobox, conserved site
SMARTSM003405.1E-17540586IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-10540574IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MELELSLGDS PAPVKATVAP TPVLTPTCMG DGEDLELVLG VRAASRDEQD NQTTCTQSSE  60
EATQGEEYET RPRGEAPVES LSFPLFVPSA ETGSANSEVC TRGFDVNTRL ADGGAAAGRP  120
SSPSSMQEVS TRQQVADQEA ADDEDNGGGG ARKKLRLSKE QSSFLEDSFK EHSTLTPKQK  180
SDLANRLNLR PRQVEVWFQN RRARTKLKQT EVDCEHLKRC CERLTRENRR LQREVAELRG  240
SLRTTSYPPL YGLHHLPAAS TVFRVCPSCE HSKVVAAASE SFSSRVFAGG TADAAMSSPA  300
AGSPPSSAAN LFGARRPHFG PFAAVIPPVL RRQPSATSLG DSPAPVKATV APTPVLTPTC  360
MGDGEDLELV LGVRAASRDE QDNQTTCTQS SEEATQGEEY ETRPRGEAPV ESLSFPLFVP  420
SAETGSANSE VCTRGFDVNT RLADGGAAAG RPSSPSSMQE VSTRQQVADQ EAADDEDNGG  480
GGARKKLRLS KEQSSFLEDS FKEHSTLTPK QKSDLANRLN LRPRQVEVWF QNRRARTKLK  540
QTEVDCEHLK RCCERLTREN RRLQREVAEL RGSLRTTSYP PLYGLHHLPA ASTVFRVCPS  600
CEHSKVVAAA SESFSSRVFA GGTADAAMSS PAAGSPPSSA ANLFGARRPH FGPFAAVIPP  660
VLRRQPSATS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1532540RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641180.0AK064118.1 Oryza sativa Japonica Group cDNA clone:002-102-B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626174.10.0homeobox-leucine zipper protein HOX7 isoform X1
SwissprotQ0E0A60.0HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7
TrEMBLA0A0E0K1C40.0A0A0E0K1C4_ORYPU; Uncharacterized protein
STRINGOPUNC02G19040.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-49homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]