PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G18950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 414aa    MW: 44021.3 Da    PI: 7.0939
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G18950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.51.9e-1467148286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g++++pk   qCk++++ l+k+yk +k+   +       ++p+f++l+
  OPUNC02G18950.1  67 WSDGATTTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKQPKsdvQCKNRIDTLKKKYKVEKAKPDS-------SWPHFHRLD 148
                      *************************************87889988664334**************99998886.......5******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.9E-2365149No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDDDGGASPS SSLSPSRSPS PLPVADPVTV AAAPPGHLAL AIPIPKPGSS SGGGGGGGGG  60
GGREDAWSDG ATTTLIDAWG ERFVALGRGS LRHPQWQEVA EVVSSRDGYS KQPKSDVQCK  120
NRIDTLKKKY KVEKAKPDSS WPHFHRLDTL LAPVHKPGAA SPAAGGPGAG NSGSNSAAAA  180
RSTAPMAPRV NFPQRTRTQF LPSSGVKRRM PSPPQVSASS ESSDGFPPEP PLAAVNGKRR  240
RVEEEVNGAD SSNRTQGLRE LAQAIRRFGE VYERVELAKR EQELRMERDR LEAARELEDQ  300
RVQFFLKMQM ELSKANNAGA SAATAVVGAV ATAVAADGNG TRRTAMATDV GTSSNHHVRY  360
RFKDSRHRHA APQQPQHQYN ENNATEAARG TGNGSDTDNK EDEDEAEDEE DESQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237241KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623080.10.0trihelix transcription factor ASIL1
TrEMBLA0A0E0K1B10.0A0A0E0K1B1_ORYPU; Uncharacterized protein
STRINGOPUNC02G18950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-30sequence-specific DNA binding transcription factors