PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G17910.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 345aa    MW: 35169.2 Da    PI: 4.9328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G17910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13105154255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+h  +Er RR++i++ f  Lr+l+P++      K +Ka+i+ +A+ +I+sL+
  OPUNC02G17910.1 105 ERMHIFAERERRRKIKNMFTDLRDLVPSL----TNKADKATIVGEAISFIRSLE 154
                      578999**********************9....68*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-16101166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-14102158No hitNo description
PROSITE profilePS5088814.919103153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10106154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-16107166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.76E-5265317No hitNo description
CDDcd048730.00379269330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAQEDTSSNA PPAAASMGSG GDVDGDNKEG TGESQSQTGN NQPLLPVIAA DKGMGVSAAG  60
TGNVDCGGGS SKGKSTATTP AASSTNAPNQ GAAAAAAAAG GRSRERMHIF AERERRRKIK  120
NMFTDLRDLV PSLTNKADKA TIVGEAISFI RSLEETVADL ERRKRERDSL AARCARLGLG  180
GSSSSSAPPP DAVDTAAVMQ PAPAPGADGG GGGSSAPPVH PAAAVAVPPP DAAAAVTAAP  240
EPATAPGTFM VWSGPSVVLN LCGGDQAFIN VSVARRPGVL TMIVDVLERH SIDVVTAQIV  300
SDQSRSLFTI HTSVDRERGM FMDTATAEEI YQLAVSEIMV WLHSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126106e-94CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0K0X50.0A0A0E0K0X5_ORYPU; Uncharacterized protein
STRINGOPUNC02G17910.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-15bHLH family protein