PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G17900.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 209aa    MW: 22041.8 Da    PI: 5.966
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G17900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-1881132156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                      ++y GVrw++ +g+W++eIrdp     r  +r++lg+f ta++Aa a++aa+++++ +
  OPUNC02G17900.1  81 CRYCGVRWRP-WGKWAVEIRDP-----RkvARIWLGTFATADDAACAYDAAALRFHEH 132
                      5788******.**********8.....337************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-1181131IPR001471AP2/ERF domain
CDDcd000181.85E-1381140No hitNo description
Gene3DG3DSA:3.30.730.103.9E-2782141IPR001471AP2/ERF domain
SMARTSM003801.9E-2682145IPR001471AP2/ERF domain
PROSITE profilePS5103221.62882139IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-2082140IPR016177DNA-binding domain
PRINTSPR003671.3E-88394IPR001471AP2/ERF domain
PRINTSPR003671.3E-8105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVALFEAAEM AAIVTALTRV IADGRGAGTG GGHDGGWHVV REEELDIGIV SAGDHAGEAS  60
VAEAETATAT AVVLVALATS CRYCGVRWRP WGKWAVEIRD PRKVARIWLG TFATADDAAC  120
AYDAAALRFH EHRAKLNFPE EASHPCRLWQ GHDHMSCSPS IVNTHLLGSW TAGPPPPSLS  180
TTCLAEATTM TMTLLGGSHG SNGAENGRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-1983139663ATERF1
3gcc_A9e-1983139663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624467.21e-60ethylene-responsive transcription factor ABR1
TrEMBLA0A0E0K0X41e-149A0A0E0K0X4_ORYPU; Uncharacterized protein
STRINGOPUNC02G17900.11e-150(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17401811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-18related to AP2 6l