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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G16840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 497aa MW: 55066.6 Da PI: 4.6007 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.6 | 2.6e-35 | 67 | 159 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++++el+ +isw + gnsfvv+d+++fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h+ F +++k+ll+ OPUNC02G16840.1 67 FLSKTYDLVSEPELDGVISWGAAGNSFVVWDPSTFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRHSKHLLK 151 9****************************************************************999.........***************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 ki r++s+ OPUNC02G16840.1 152 KIVRRRSS 159 ****9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.08E-33 | 62 | 156 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 8.4E-38 | 63 | 156 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.8E-55 | 63 | 156 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-17 | 67 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.7E-31 | 67 | 156 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-17 | 105 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 106 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.5E-17 | 118 | 130 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MDHINHPPTP TTMDAAAALL LEPKLEVGDE PLQMSPPCPF VPLDQLMQPQ PPRPLEALLQ 60 GTQLAPFLSK TYDLVSEPEL DGVISWGAAG NSFVVWDPST FARDVLPHHF KHNNFSSFVR 120 QLNTYGFRKV HADRWEFAHE DFLRHSKHLL KKIVRRRSSP TQQSGLQPGS SGESGLDPEL 180 NTLRREKSAL LQEVTRLKQE HLQTIEHMST LNQRLESAED RQKQMVSFLA KLLQNPTFLR 240 QLKLHRQQKE IDSTRVKRKF LKHVPHGNTD SGESSSQHTG ESNLDFSPTS LDLPATHGDI 300 SDLQNFLLED GDLHLAMLPD NIGLDGVEAP DDIGALVQGF DTQEELELGS GVELLEMPPA 360 SGPHGQDLTI GRSKGKNVLS PGLDAISSEA DCLGSFSDNM GMLSDSMLQT AGKLMDADDD 420 ERIWGVDASS ALQGSCSGSS QQAYGSLASD PYLMEMANKP EKFWELDFQA LDEEDLQLDK 480 CVIDDPSLEQ QRGNMNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-24 | 62 | 159 | 15 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101934 | 0.0 | AK101934.1 Oryza sativa Japonica Group cDNA clone:J033073P11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623061.1 | 0.0 | heat stress transcription factor A-3 | ||||
Swissprot | Q6H6Q7 | 0.0 | HSFA3_ORYSJ; Heat stress transcription factor A-3 | ||||
TrEMBL | A0A0E0K0J7 | 0.0 | A0A0E0K0J7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G16840.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9010 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 9e-71 | heat shock transcription factor A3 |
Publications ? help Back to Top | |||
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