PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G15430.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 479aa MW: 53268 Da PI: 5.1732

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G15430.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.7	4.2e-34	25	116	2	101
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+ye+++d+++++++sws ++ sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+ weF++++F kg+k+ll OPUNC02G15430.1 25 FLLKTYEMVDDPSTDTVVSWSdASDASFVVWNHPEFAARLLPVYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFANEYFIKGQKHLL 109 9******************66679************************************999.........************ PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k OPUNC02G15430.1 110 KNIHRRK 116 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.1E-35	21	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.99E-33	21	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	7.5E-58	21	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.3E-29	25	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	65	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MEVAAGARGG GGGGGGGGGG GPAPFLLKTY EMVDDPSTDT VVSWSDASDA SFVVWNHPEF 60 AARLLPVYFK HSNFSSFIRQ LNTYGFRKID PERWEFANEY FIKGQKHLLK NIHRRKPIHS 120 HSHPPGALPD NERAIFEDEI ERLSREKSNL QADLWKSKQQ QSGTMIQIED LERRVLDMEQ 180 RQTKMIAFLQ QASKNPQFVN KLVKMAEASS IFTDAFHKKR RLPGLDYSIE NTETTSFYDD 240 HSSTSKQETG NLLNQHFSDK LRLGLCHAMT ESNIITLSTQ SSNEDNGSPH GKHPECDRMG 300 RECLPLVPQM MELSDTGTSI CPSKSSCFAP PISDEGLLTC HLSLTLASCS MDVDKSQAPN 360 ANGTTVDNPT EAATATIEKD DTIDRSFDDN QKKSSDSRTV DATTPQANAR VACEAPAAPA 420 AVVNDKFWEQ FLTERPGCSE TEEASSGLRT DPSREQMEEN RQAYDHSRND REDVEQLKL

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MEVAAGARGG GGGGGGGGGG GPAPFLLKTY EMVDDPSTDT VVSWSDASDA SFVVWNHPEF  60
AARLLPVYFK HSNFSSFIRQ LNTYGFRKID PERWEFANEY FIKGQKHLLK NIHRRKPIHS  120
HSHPPGALPD NERAIFEDEI ERLSREKSNL QADLWKSKQQ QSGTMIQIED LERRVLDMEQ  180
RQTKMIAFLQ QASKNPQFVN KLVKMAEASS IFTDAFHKKR RLPGLDYSIE NTETTSFYDD  240
HSSTSKQETG NLLNQHFSDK LRLGLCHAMT ESNIITLSTQ SSNEDNGSPH GKHPECDRMG  300
RECLPLVPQM MELSDTGTSI CPSKSSCFAP PISDEGLLTC HLSLTLASCS MDVDKSQAPN  360
ANGTTVDNPT EAATATIEKD DTIDRSFDDN QKKSSDSRTV DATTPQANAR VACEAPAAPA  420
AVVNDKFWEQ FLTERPGCSE TEEASSGLRT DPSREQMEEN RQAYDHSRND REDVEQLKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-21	8	115	9	129	Heat shock factor protein 1
5d5v_B	2e-21	8	115	9	129	Heat shock factor protein 1
5d5v_D	2e-21	8	115	9	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065643	0.0	AK065643.1 Oryza sativa Japonica Group cDNA clone:J013035J03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622576.1	0.0	heat stress transcription factor A-5
Swissprot	Q6K6S5	0.0	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	A0A0E0K007	0.0	A0A0E0K007_ORYPU; Uncharacterized protein
STRING	OPUNC02G15430.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-118	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]