PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G10720.4

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 528aa MW: 57964.5 Da PI: 7.9927

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G10720.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.4	4.5e-16	181	220	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+C+ks+ClkkYCeCf+a+ Cs++C+C+dCkN e OPUNC02G10720.4 181 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 220 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	28.96	102	221	IPR005172	CRC domain
Pfam	PF03638	1.2E-4	112	133	IPR005172	CRC domain
SMART	SM01114	0.22	112	136	IPR033467	Tesmin/TSO1-like CXC domain
SMART	SM01114	7.6E-18	181	222	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.8E-12	184	219	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MYSARGLIWL IPPNSPPELA SDSSPPTSSP LFPSASTLLS ARVDQRRGLH LPLPREPPPT 60 GAAVLVRGIL AGSMPPVRPA TVAPPPPQKK PAVPVSRPWP MSFTPHPPPP PYCECFAARV 120 YCDGCHCSPC GNKIENENIR KEAIDTILLR NPLAFQPKIE NGPNTITVRK DNSEAMPPIP 180 KHNKGCHCRK SECLKKYCEC FQANILCSKN CRCQDCKNFE GSEERQALVQ MKNASDRDHI 240 QEAANFAPNC ATGSLGYKSS PAVRRKNYQE NSLGEQIRSE TQFQPLTPSC TGFGGDIASN 300 YQSKSSEMIY RSPLANTIPL IEVNDLVKHA LVACRKAPEA FLTKAGNKVE MQAEKQYQTN 360 DEINNDKNKE QNLKGASLKD IQNKASIDQQ NINETGPHLA NSFKDSRPAS PGTQALMCDE 420 LDTTFGNDDY RSPFVVPSCD QDISKLNADQ ERIVLTGLRD YLRVLITRGN INATKFSLET 480 AMELDSRRHH GATTVISQDK SMSSSCPETL GNNQTSMSND EQKGKSGG

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MYSARGLIWL IPPNSPPELA SDSSPPTSSP LFPSASTLLS ARVDQRRGLH LPLPREPPPT  60
GAAVLVRGIL AGSMPPVRPA TVAPPPPQKK PAVPVSRPWP MSFTPHPPPP PYCECFAARV  120
YCDGCHCSPC GNKIENENIR KEAIDTILLR NPLAFQPKIE NGPNTITVRK DNSEAMPPIP  180
KHNKGCHCRK SECLKKYCEC FQANILCSKN CRCQDCKNFE GSEERQALVQ MKNASDRDHI  240
QEAANFAPNC ATGSLGYKSS PAVRRKNYQE NSLGEQIRSE TQFQPLTPSC TGFGGDIASN  300
YQSKSSEMIY RSPLANTIPL IEVNDLVKHA LVACRKAPEA FLTKAGNKVE MQAEKQYQTN  360
DEINNDKNKE QNLKGASLKD IQNKASIDQQ NINETGPHLA NSFKDSRPAS PGTQALMCDE  420
LDTTFGNDDY RSPFVVPSCD QDISKLNADQ ERIVLTGLRD YLRVLITRGN INATKFSLET  480
AMELDSRRHH GATTVISQDK SMSSSCPETL GNNQTSMSND EQKGKSGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-20	95	231	7	133	Protein lin-54 homolog
5fd3_B	3e-20	95	231	7	133	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004771	1e-172	AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11.
GenBank	AP014958	1e-172	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-172	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623618.1	0.0	protein tesmin/TSO1-like CXC 5
TrEMBL	A0A0E0JYD6	0.0	A0A0E0JYD6_ORYPU; Uncharacterized protein
STRING	OPUNC02G10720.2	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	2e-71	Tesmin/TSO1-like CXC domain-containing protein