PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G09860.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 403aa    MW: 41393 Da    PI: 8.1472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G09860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13127177255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  OPUNC02G09860.1 127 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 177
                      789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.64E-13123181No hitNo description
SuperFamilySSF474592.62E-17125200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.237125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-13127188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MADGGGLCEL FSDDHRDIRH VADADLFRIL ETWEECINGG GGGVSLAAGV GGGGVGDQGA  60
AAASSGAGGG ARTTTAANAR RREGRDEEKG GGGGGGPPAQ KKQKGSSSLS SSTAAAAAVG  120
DSEGAAKMSH ITVERNRRKQ MNEHLAVLRS LMPCFYVKRG DQASIIGGVV DYIKELQQVL  180
RSLEAKKSRK AYADQVLSPR PSPAAAALMV KPTPPISPRF AAAAVPISPR TPTPGSPYNK  240
HVAAARPPHP AAAATSSCSA YSMSPAMTPT SSSSTTTHDL SPQLPPPPFL PILDSLITEL  300
AARGGCRPLL PASSAIAGGG GFVVPDVKVE FAGPNLVLKT VSHRAPGQAL KIIAALESLS  360
LEILHVSIST VDDTTVLSFT IKIGIECELS AEELVKEIQQ TFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179103RRREGRDEEKGGGGGGGPPAQKKQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624375.20.0transcription factor SPEECHLESS
TrEMBLA0A0E0JY370.0A0A0E0JY37_ORYPU; Uncharacterized protein
STRINGOPUNC02G09860.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.18e-42bHLH family protein