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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G08680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 186aa MW: 19459.8 Da PI: 10.0257 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.5 | 3.7e-06 | 23 | 78 | 6 | 52 |
HHHHHHHHHHHHHHHHHHHCTSCCC............TTS-.STCHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas.........kapskK.lsKaeiLekAveYIk 52 + +Er RR+++N+ ++ L +l+ + s +++ + + L +A eYI+ OPUNC02G08680.1 23 KTAERIRRNQMNKLYSHLDSLVRSGSdagaaapptQGGP-AaTTRPDRLGEAAEYIR 78 679*********************777999999844444.35899999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.32E-6 | 22 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-5 | 23 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MEMPPPAGGG GGGGSSGGKP DRKTAERIRR NQMNKLYSHL DSLVRSGSDA GAAAPPTQGG 60 PAATTRPDRL GEAAEYIRRK EERVDMLREK KRELTGGSSS AATPEVEVQH LGSGLHAILV 120 TGGPPNDGAS FHRAVRAVEE AGGQVQNAHF SVVGAKAVYT IHAMVGEGYG GIERVVQRLK 180 EAIRSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005756 | 6e-77 | AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08. | |||
GenBank | AP014958 | 6e-77 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688523.1 | 3e-78 | PREDICTED: uncharacterized protein LOC107303503 | ||||
TrEMBL | A0A0E0JXP7 | 1e-130 | A0A0E0JXP7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G08680.1 | 1e-131 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 4e-18 | bHLH family protein |