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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G08670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 23036 Da PI: 6.8858 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.5e-18 | 42 | 89 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ OPUNC02G08670.1 42 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 89 57*****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.00E-20 | 42 | 101 | No hit | No description |
Pfam | PF00847 | 1.0E-12 | 42 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 43 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-34 | 43 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-21 | 43 | 101 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.037 | 43 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MPELEVCSPA SSGGSPPESP VEAGRRGGGG EKRGRGDGGR HPSYRGVRMR AWGKWVSEIR 60 EPRKKSRIWL GTFPTPEMAA RAHDAAALVV KGPAAVLNFP DMAASLPRPA SASPRDVQAA 120 AARAAAMDPP PPSLILVFGA AFHDTAADHS WCDPAWIDGG YAVAAAAAAA AAHDDLFGLD 180 ADHHGWAQSV GALLWNLLGL LSSEFVFPLS QWLYLQSVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-20 | 34 | 100 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004857 | 1e-175 | AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06. | |||
GenBank | AP014958 | 1e-175 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY258281 | 1e-175 | AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624743.1 | 1e-85 | ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | A0A0E0JXP6 | 1e-154 | A0A0E0JXP6_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G08670.1 | 1e-154 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-27 | ERF family protein |