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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC02G05940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22074.7 Da PI: 7.5707 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.3e-19 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp k++r++lg++++ae+Aa+a++aa+++l+g OPUNC02G05940.1 23 RFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTYDSAEDAARAYDAAARALRG 72 69*******.**********83...36*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.0E-38 | 23 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.35E-18 | 23 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 23 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.512 | 23 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-13 | 23 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 23 | 82 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.9E-10 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-10 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MRRGGGGGGV AAEDAEAEAE AARFRGVRKR PWGRYAAEIR DPAKKARVWL GTYDSAEDAA 60 RAYDAAARAL RGPKAKTNFP LSLPHAQPQL HHHPHHHLTY SPYPAAAVPA AVARPATSSL 120 SSTVESFGTR PRPVLPPRPP IPPTIPDGDC HSDCGSSASV VDDDCTDAAA SPSCRLPFQF 180 DLNLPPGGGG VGVGCVYDDE ELRLTALRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 19 | 87 | 1 | 70 | ATERF1 |
3gcc_A | 3e-21 | 19 | 87 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004046 | 0.0 | AP004046.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1145_F01. | |||
GenBank | AP005849 | 0.0 | AP005849.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879040.1 | 4e-63 | ethylene-responsive transcription factor 3 | ||||
Swissprot | O80339 | 6e-34 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0E0JWL4 | 1e-148 | A0A0E0JWL4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC02G05940.1 | 1e-148 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 1e-14 | ethylene responsive element binding factor 3 |
Publications ? help Back to Top | |||
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