PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G05430.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 224aa    MW: 24711.8 Da    PI: 9.9822
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G05430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.5e-3074133159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ k++++pr+Y+rC++a  Cpvkkkv+rsaed+++++ tYegeHnh 
  OPUNC02G05430.1  74 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSAEDNTILVATYEGEHNHG 133
                      58***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.19969135IPR003657WRKY domain
SuperFamilySSF1182904.05E-2673135IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-2973135IPR003657WRKY domain
SMARTSM007745.4E-3574134IPR003657WRKY domain
PfamPF031063.6E-2575132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNLRRVLSLF QTPLLSFTGD SEDGRGRERQ WRRVGAARHG GLEXEPCKRI REECKPKISK  60
LYVHADPSDL SLVVKDGYQW RKYGQKVTKD NPCPRAYFRC SFAPACPVKK KVQRSAEDNT  120
ILVATYEGEH NHGQPPPPPQ SAAQNSDGSG KSAGKPPHAP AAPVVPHRQH EPVLNGEQAA  180
AASELIRRNL AEQMAMTLTR DPSFKAALVT ALSGRILELS PTKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-2359136175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1 (PubMed:15047897). Regulates, probably indirectly, the activation of defense-related genes such as GF14E during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). Confers resistance to the virulent bacterial pathogen X.oryzae pv. oryzae (Xoo) 13751, probably via the regulation of NPR1 and PR1b defense signaling pathways (PubMed:16919842). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16919842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide and fungal cerebroside elicitors) and pathogen infection (e.g. the compatible pathogenic fungus M.grisea race 007, M.grisea crabgrass BR29). Accumulates in response to M.oryzae (By similarity). Triggered by defense signaling molecules, such as salicylic acid (SA), methyl jasmonate (MeJA), 1-aminocyclo-propane-1-carboxylic acid (ACC), wounding and pathogen infection (e.g. X.oryzae) (PubMed:16919842). Repressed by gibberellic acid (GA) (at protein level) (PubMed:15047897). Induced by abscisic acid (ABA) in aleurone cells, roots and leaves (PubMed:25110688). Accumulates in response to uniconazole, a GA biosynthesis inhibitor. Triggered strongly by cold in leaves, stems and developing spikes, but moderately by drought and salt stresses (By similarity). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:15047897, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1908170.0AB190817.1 Oryza sativa Japonica Group OsWRKY71 mRNA for transcription factor OsWRKY71, complete cds.
GenBankAY6769270.0AY676927.1 Oryza sativa (indica cultivar-group) transcription factor WRKY71 (WRKY71) mRNA, complete cds.
GenBankCT8305910.0CT830591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627417.11e-111WRKY transcription factor WRKY71
SwissprotQ6IEL01e-112WRK71_ORYSI; WRKY transcription factor WRKY71
TrEMBLA0A0E0JWF51e-164A0A0E0JWF5_ORYPU; Uncharacterized protein
STRINGOPUNC02G05430.11e-165(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.14e-43WRKY DNA-binding protein 60
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]