|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
OPUNC02G04830.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
Trihelix |
Protein Properties |
Length: 387aa MW: 40807.7 Da PI: 4.0858 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC02G04830.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 27.4 | 8.9e-09 | 70 | 153 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr 71
+Wt e+laL++ + +++ +r+ ++ ++W+ v++++ ++ g r + +C+ +we l+ +y ++++e ++
OPUNC02G04830.1 70 EWTPAETLALVAEVAAVDDGWSRSISAFQKWAIVAENLadsysaaaasrgrARVGRGRAARECRRRWETLAAEYGVVRRWEVRG 153
5*************************************************9999************************999876 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MAMDPDAAEW PCIIQALPAL PPSPSSSGVP RLPTMVQALP AATDPPLAAR PRRGAEPPSP 60 RRTRSGGAPE WTPAETLALV AEVAAVDDGW SRSISAFQKW AIVAENLADS YSAAAASRGR 120 ARVGRGRAAR ECRRRWETLA AEYGVVRRWE VRGAGGYWQM SAAARRKAGL PADFDAEVYG 180 AMEALTLVEE ALLADAAAAG AAVGLVGAAG AEIGQKSAAA GEVGEEDEGE AGEKGEGEAR 240 EEDGNEDRGE VGEEGEGEVG EGGGNEMVEE DDDNDDEDAQ PDGGNAITAS DDLVCETEAN 300 NEVKKSQTDA CELANKLQEN AQHIHMLLKE EAGENESHNL FISSDSMETT RQKADELIKS 360 LGGLVSYLNQ FTDLIKENGF ENVVGMS
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP005772 | 1e-151 | AP005772.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21. |
GenBank | AP014958 | 1e-151 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |