PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G04830.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 387aa    MW: 40807.7 Da    PI: 4.0858
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G04830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.48.9e-0970153171
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr 71 
                      +Wt  e+laL++ +  +++  +r+ ++ ++W+ v++++             ++ g  r + +C+ +we l+ +y  ++++e ++
  OPUNC02G04830.1  70 EWTPAETLALVAEVAAVDDGWSRSISAFQKWAIVAENLadsysaaaasrgrARVGRGRAARECRRRWETLAAEYGVVRRWEVRG 153
                      5*************************************************9999************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.82971140IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAMDPDAAEW PCIIQALPAL PPSPSSSGVP RLPTMVQALP AATDPPLAAR PRRGAEPPSP  60
RRTRSGGAPE WTPAETLALV AEVAAVDDGW SRSISAFQKW AIVAENLADS YSAAAASRGR  120
ARVGRGRAAR ECRRRWETLA AEYGVVRRWE VRGAGGYWQM SAAARRKAGL PADFDAEVYG  180
AMEALTLVEE ALLADAAAAG AAVGLVGAAG AEIGQKSAAA GEVGEEDEGE AGEKGEGEAR  240
EEDGNEDRGE VGEEGEGEVG EGGGNEMVEE DDDNDDEDAQ PDGGNAITAS DDLVCETEAN  300
NEVKKSQTDA CELANKLQEN AQHIHMLLKE EAGENESHNL FISSDSMETT RQKADELIKS  360
LGGLVSYLNQ FTDLIKENGF ENVVGMS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057721e-151AP005772.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0073A21.
GenBankAP0149581e-151AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626064.10.0trihelix transcription factor ASR3 isoform X2
TrEMBLA0A0E0JW720.0A0A0E0JW72_ORYPU; Uncharacterized protein
STRINGOPUNC02G04830.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433