PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G04120.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 911aa    MW: 100837 Da    PI: 6.2095
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G04120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-24139240199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  OPUNC02G04120.1 139 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 228
                      99*****************************86555544..8************************************************..78 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OPUNC02G04120.1 229 DSNQLLLGIRRA 240
                      78889***9997 PP
2Auxin_resp120.41.4e-39265348183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  OPUNC02G04120.1 265 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWTNSHWRSVK 348
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-48124268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-42131254IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-21138239No hitNo description
PfamPF023624.6E-23139240IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098139241IPR003340B3 DNA binding domain
SMARTSM010193.3E-25139241IPR003340B3 DNA binding domain
PfamPF065072.5E-34265348IPR010525Auxin response factor
PfamPF023091.6E-7774865IPR033389AUX/IAA domain
SuperFamilySSF542779.16E-8777856No hitNo description
PROSITE profilePS5174523.691780864IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MKLSPSAGGG GSGSVSDQPA SPPEVAEEQK CLNSELWHAC AGPLVSLPAV GSRVVYFPQG  60
HSEQVAASTN KEMESQIPNY PNLPPQLICQ LHNVTMHADA ETDEVYAQMT LQPLSPQELK  120
DPFLPAELGT ASKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELM  180
AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDS NQLLLGIRRA  240
NRPQTVMPSS VLSSDSMHIG LLAAAAHAAS TNSRFTIFYN PRASPSEFVI PLAKYVKAVY  300
HTRISVGMRF RMLFETEESS VRRYMGTITG ISDLDPVRWT NSHWRSVKVG WDESTAGERQ  360
PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP TGLPSLYGGK EDDLASSLMW LRDGQNTGFQ  420
SLNFGGLGIS PWMQPRLDSS LLGLQPDMYQ TIAAAAALQS TTKQVSPAML QFQQPQNIVG  480
RSSLLSSQIL QQAQPQFQQM YHQNINGNTI QGHSHPEYLQ QPLQHCQSFN EQKPQLQPQQ  540
QQQESHQQQP QHQQMQQQKH LSNFQTVPNA LSVFSQLSST QSTPSTLQTV SPFSQQHNFP  600
DTNISCLSPS NVSSMHDTLR PFPSEAASDL PGVPRITPVP VSDPWSSKRV AVESTISSRP  660
HAISSQIENF DLTPSIPQNS TLAPLPGREC LVDQDGGSDP QNHFLFGVNI DSQSLLMQDG  720
IPSLHNDNSS STIPYSTSNF LSPSQDDYPL NQTLTTPGSL DESEYVPCSD NADQVKRPPA  780
TFVKVYKSGT VGRLLDITRF SSYHELRSEV GRLFGLEGQL DDPLRSGWQL VFVDREDDVL  840
LVGDDPWQEF VNSVSCIKIL SPQEVQQMGK PGIELFSTSA RRLGNSCDNY MSRQESRSLS  900
TGIASVGSVE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1603236951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705690.0AK070569.1 Oryza sativa Japonica Group cDNA clone:J023056C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625706.10.0auxin response factor 6
RefseqXP_025879024.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0E0JVX60.0A0A0E0JVX6_ORYPU; Auxin response factor
STRINGOPUNC02G04120.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]