 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
OPUNC02G03070.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
HD-ZIP |
Protein Properties |
Length: 253aa MW: 27091.1 Da PI: 9.1773 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC02G03070.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 59.2 | 6.9e-19 | 122 | 176 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++t eq + Le+ F+ ++ +s++e+ eLA klgL+ rqV vWFqNrRa+ k
OPUNC02G03070.1 122 RKKLRLTGEQATLLEDSFRAHNILSHAEKHELAGKLGLSARQVEVWFQNRRARTK 176
788899***********************************************98 PP
|
2 | HD-ZIP_I/II | 113.3 | 1.5e-36 | 122 | 209 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
+kk+rl+ eq++lLE+sF++++ L++ +K+ela +Lgl++rqv+vWFqnrRARtk+kq+E d++ L+r++++l+ en+rL++e +eL+
OPUNC02G03070.1 122 RKKLRLTGEQATLLEDSFRAHNILSHAEKHELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCEHLAGENARLRHELAELH 209
69************************************************************************************98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MSSSSLTTTS SMEAGTVTDS VDDLDTRLSL AVGCCPPPPP RRPVVLFGEL FPPQQQKTTT 60 TTTTAAAAAA TGKRDQRGGA EATTRQRRNS KKGRTVRGDD DGDGDRRSPS GGGGGNDDGA 120 SRKKLRLTGE QATLLEDSFR AHNILSHAEK HELAGKLGLS ARQVEVWFQN RRARTKLKQT 180 EADCDLLRRW CEHLAGENAR LRHELAELHR SSSPPVSSHA VATPVVCPSC AHDDKRRLAF 240 ATIGAAAGDM ASN
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 120 | 126 | SRKKLRL |
2 | 170 | 178 | RRARTKLKQ |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP005412 | 1e-132 | AP005412.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13. |
GenBank | AP014958 | 1e-132 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
GenBank | CP012610 | 1e-132 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |