PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G02660.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1101aa    MW: 122359 Da    PI: 6.2204
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G02660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.96.1e-21109210199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+    ++
  OPUNC02G02660.1 109 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVV--RD 198
                      99*****************************954.4444.49**********************************************99..55 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OPUNC02G02660.1 199 EKHQLLLGIRRA 210
                      788889999997 PP
2Auxin_resp117.61e-38235318183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  OPUNC02G02660.1 235 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 318
                      79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575126No hitNo description
SuperFamilySSF1019361.28E-4198238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-39101224IPR015300DNA-binding pseudobarrel domain
CDDcd100178.74E-18108209No hitNo description
SMARTSM010196.7E-21109211IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912109211IPR003340B3 DNA binding domain
PfamPF023621.1E-18109210IPR003340B3 DNA binding domain
PfamPF065071.4E-33235318IPR010525Auxin response factor
PfamPF023093.6E-99651053IPR033389AUX/IAA domain
PROSITE profilePS5174529.2589681052IPR000270PB1 domain
SuperFamilySSF542773.73E-79861047No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1101 aa     Download sequence    Send to blast
MASMKQQTPA SSAVTAAASS SAVAACEGER KAAAINSELW HACAGPLVSL PPVGSLVVYF  60
PQGHSEQADP DTDEVYAQMT LQPVNTYGKE ALQLSELALK QARPQMEFFC KTLTASDTST  120
HGGFSVPRRA AEKIFPPLDF SMQPPAQELQ ARDIHDNVWT FRHIYRGQPK RHLLTTGWSL  180
FVSGKRLFAG DSVIVVRDEK HQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHAAA  240
NSSPFTIFYN PRASPTEFVI PFAKYQKALY SNQISLGMRF RMMFETEELG TRRYMGTITG  300
ISDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VAAPFFLCPQ PFFGVKRPRQ  360
LDDESEMENL FKRAMPWLGE EVCIKDAQNQ NSTAPGLSLV QWMNMNRQQS SSLANTATQS  420
EYLQALGNPS MQNLAADELA RQLYVQNNLL QQNCIQFNSP KLPQQMQTMN DLSKAAIPLN  480
QLGAIINPQD QKQDAVNHQR QQNSIQVIPL SQAQSNLVQA QVIVQNQMQQ QKPSPTQNPQ  540
RINSQQLLLS HQQQDQNLQL QQQLLLQQKQ QLQQQQQQQN QQQLNKSLGQ LVNLASQQSK  600
LFDEELQLQI LQKLQQQSLM SQSTSTLSQP PLIQEQQKLI MDMQKQLSNS HSLAQQQMMP  660
QQEIKPSLQA TPLLPTVQQE QQQKLLQKQI SLADVSGVAF QPISSTNVIP KTGGAMIVSG  720
ATQSVVTEEM PSCSTSPSTA NGNHLAQSTK NRHCINTERL PPSTAPMLIP TSVDAVTATP  780
LMTKELPKPN NNVKQSVVNS KLPNVAPGPQ NCMNNALQTD NLETSSSATS LCPSRTDGLV  840
HQGFPSSNFN QHQMFKDALP DVEIEGVDPS NSGLFGINND NPLGFPIETE DLLINALDSV  900
KYQNHISTDV ENNYPMQKDA LQEISTSMVS QSFGQSDMAF NSIDSAINDG AFLNKNSWPA  960
APPLQRMRTF TKVYKRGAVG RSIDIGRYSG YEELKHALAR MFGIEGQLED RQRIGWKLVY  1020
KDHEDDILLL GDDPWEEFVN CVRCIRILSP QEVQQMSLDG DLGSNVLPNQ ACSSSDGVNG  1080
WRPRCDQNSG NPSIAPYDQF E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1452833945388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052940.0AP005294.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1679_B08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627049.10.0auxin response factor 5 isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0E0JVE00.0A0A0E0JVE0_ORYPU; Auxin response factor
STRINGOPUNC02G02660.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19