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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC01G42190.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
C2H2 |
Protein Properties |
Length: 473aa MW: 50186.1 Da PI: 7.9919 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC01G42190.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 18.8 | 4.4e-06 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cgk F r nL+ H r H
OPUNC01G42190.1 79 FVCEICGKGFQRDQNLQLHRRGH 101
89*******************88 PP
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2 | zf-C2H2 | 12.5 | 0.00046 | 189 | 207 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg++Fsr++++++H +
OPUNC01G42190.1 189 DCGTVFSRRDSFVTHRAFC 207
9**************8765 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 473 aa
Download sequence Send
to blast |
MEEFEMQQPY YSKLLLDGPL KIASVDESDL QLVAGVSSDP PPAPPPAVKK KKRSLPGTPD 60 PSAEVVALSP RTLLATNRFV CEICGKGFQR DQNLQLHRRG HNLPWKLRQR GAGGAGEPPR 120 KRVYVCPEAS CVHHSPSRAL GDLTGIKKHF CRKHGEKKWK CDRCCKRYAV HSDWKAHSKV 180 CGTREYKCDC GTVFSRRDSF VTHRAFCDAL AQENNKLAQP MNMAAVTSAL QGQQQAHHLV 240 LPSQPVSDDD DAAGYGLAAD VKSPHLKMFP DVDNTPLLPA LSMAGCMLSS LGARAAPSSS 300 SPFLHIHGRN LGMDAPSDAA TGFPPPAAGS AAIMSATALL QKAAELGATT STSCYGGVAF 360 PSMGIAGGID RIPTIGHHLG PYDDVVPAAL GQTATQLVGF DLGGLLPGQL YGGGGAMTRA 420 IGSLMHGGDQ HVGVVDRRRG EGVRVVDYMG VDDDDHGSFD GVGPFGPHIG PWA
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK070390 | 0.0 | AK070390.1 Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence. |