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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC01G41290.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 234aa MW: 25091.5 Da PI: 8.9593 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC01G41290.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 105.2 | 8.4e-33 | 24 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknr.atksgyWkatgkdkev 92
lp GfrF+Ptdeel+ +yL++kv + +l++ +vi+ +d+ +++PwdL ++ e yfF+k +++ + g +r a +g+W+a+gk+k v
OPUNC01G41290.1 24 LPIGFRFRPTDEELLLHYLRRKVMSCPLPA-DVIPVADLARTHPWDLL--PGDGDGERYFFHKPATSCWRrGGGGSRaAGGDGVWRASGKEKLV 114
699***************************.99**************4..34567799****99988764378888846679***********9 PP
NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ ++ vg k+tLvf+ ++ g +tdW mheyrl
OPUNC01G41290.1 115 VAPrCKRPVGAKRTLVFF---RRGGARTDWAMHEYRL 148
99867889**********...567889********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MAVVTAEAAG GGGGGGYRMV QAGLPIGFRF RPTDEELLLH YLRRKVMSCP LPADVIPVAD 60
LARTHPWDLL PGDGDGERYF FHKPATSCWR RGGGGSRAAG GDGVWRASGK EKLVVAPRCK 120
RPVGAKRTLV FFRRGGARTD WAMHEYRLLP AALHAAADDH PPEANDWVVC RIFKKTTPAH 180
RRSPPCIRGT PRRRAAAAAD DMPSSPSSCV TDGGDMGEEG EESSSCSVVA SNCP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-26 | 19 | 181 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-26 | 19 | 181 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-26 | 19 | 181 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-26 | 19 | 181 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-26 | 19 | 181 | 12 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-26 | 19 | 181 | 12 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK067450 | 0.0 | AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence. |
| GenBank | AK068446 | 0.0 | AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence. |
| GenBank | AK288942 | 0.0 | AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence. |
| GenBank | CT829591 | 0.0 | CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence. |
| GenBank | CT829592 | 0.0 | CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence. |
| GenBank | CU406744 | 0.0 | CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence. |
| GenBank | GU120351 | 0.0 | GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds. |
