PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G40520.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 552aa    MW: 58072.7 Da    PI: 6.95
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G40520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09291338455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  OPUNC01G40520.1 291 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 338
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.17E-10285342No hitNo description
SuperFamilySSF474591.7E-16285356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256287337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16289355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6291338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10293343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MNCGPPDQLP PATAPSCFLN LNWDQSMDAA AAGGHHLDPA LSSMVSSPAS NSTAPDGLAL  60
HGISPQPHYG GTPLSSPPKL NLSMMGQFHH YAAPPQVGGG GGGGGGGGLR ILENLMPMGH  120
LDQFLADPGF AERAARLSGF DTRGGGGGYG GASPAQFGLP DAGPAGASKE MELGNTRDES  180
SVSDPAPGGA EIPPKGASDG NARKRKASGK GKGKDSPMST SAAKEDSSGK RCKSTEESNA  240
AAEENSGKGK AAQSNSENGG KKQGKDSSSK PPEPPKDYIH VRARRGEATD SHSLAERVRR  300
EKISQRMKLL QDLVPGCNKV VGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPQLDFNNL  360
PNLLAKDMHQ SCSPLQSSHF PLETSGAPLP YINQPQQGNP LGCGLTNGMD NQGSMHPLDP  420
AFCRPMGSHH PFLNGVSDAA SQVGAFWQDD LQSVVQMDMG QSQEIATSSN SYNGHGQKEQ  480
SSCELGTGFV AAFELYDKYP EMETAIKIQD YLTASPADFF STISMGIGNV TRYKKETALQ  540
QMRRSHGKKG KG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
GenBankHQ8588640.0HQ858864.1 Oryza sativa Japonica Group isolate UT1673 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621927.10.0transcription factor bHLH77 isoform X2
TrEMBLA0A0E0JSQ80.0A0A0E0JSQ8_ORYPU; Uncharacterized protein
STRINGOPUNC01G40520.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-59bHLH family protein