PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G39910.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 912aa    MW: 101556 Da    PI: 8.6262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G39910.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017794816121
                      EEET..TTTEEESSHHHHHHHHH CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHir 21 
                      y+C    C++sF++k +L  H +
  OPUNC01G39910.2 794 YSCDieGCSMSFRTKRDLSLHKS 816
                      89*******************76 PP
2zf-C2H211.90.0007819841323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      Cp   Cgk F ++ +L +H ++H
  OPUNC01G39910.2 819 CPvkGCGKKFFSHKYLLQHRKVH 841
                      9999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035517794816IPR015880Zinc finger, C2H2-like
SMARTSM003550.62817841IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.612817846IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.6E-6819845IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280819841IPR007087Zinc finger, C2H2
SuperFamilySSF576672.46E-10834875No hitNo description
Gene3DG3DSA:3.30.160.601.0E-8846871IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0029847871IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.323847876IPR007087Zinc finger, C2H2
PROSITE patternPS000280849871IPR007087Zinc finger, C2H2
SuperFamilySSF576676.8E-8865899No hitNo description
Gene3DG3DSA:3.30.160.606.1E-9872900IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.7877903IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616877908IPR007087Zinc finger, C2H2
PROSITE patternPS000280879903IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MVSHYQLLYE LALSMRFREP SNGEMETRSS RIKEKKKCEG EQLVKKMFIR NVIEDNELLS  60
RLLNDRSFCI ILPANAHDSP SLSTLRSTNQ SNMDSRISHN LCSREEAPEA SGCLSLNRIG  120
DTRNCISSDT HNMEGDKEDI LSATGLLDQG LLSCVTCGIL SFSCVAVLKP RDCTARYLMS  180
ADSNSINNQL SISGGSILAD ALTNERNGII SRPYAEHCRN EIMSDDAEID RNSALDLLAF  240
AHGGQSDSEE DPLEKILKIA HGINKSQPTS SNNVGCVGTK LSSSSTECQE RPSSQNAHCN  300
GSSVISNGPK GVRTRNKYQL KMVLSEGFQA KDMYSAKEKK VQSEPSSSKG AVNETVDVRG  360
TENDVGCKST TISVSEHRGS TKDMYSVKEK KVQSEPSSLK GTVKETVDVS GTENDVRCKS  420
TTISVSEHRG STPMTNSLAA SIMKPDKDSS RMHVFCLEHA IEVEKQLHAI GGSHIMLLCR  480
PEYPKIEAEA RLLGEEMGLV YDWKDIHFKE ANMEDRQKIQ EVVRDEEAIP TSSDWAVKLG  540
INLYYSANLA KSPLYNKQMP YNRVIYRAFG CDFPNDSPVK LNTCERRQSH QKKIVVAGRW  600
CGKVWMSKQV HPYLAHRVES QEAEEADRIC SYHFDEKHKA EPVENSGRVE ASKRKSSSLT  660
DVTESSNRRG EIPGEETNTK RPKHSQEGNL RALESAAEVV APSPAGTVLR ISSRIANRAN  720
KLKSRMEEED VPSSRPKSNV KEKSSHASGQ KPNVQEANAN SASHLRAIAP KQKTEAGAKK  780
PTRTAKPPKQ AVEYSCDIEG CSMSFRTKRD LSLHKSDICP VKGCGKKFFS HKYLLQHRKV  840
HTDDRPLTCP WEGCNMAFKW PWARTEHLRV HTGDRPYVCH EPGCAQTFRF VSDFSRHKRK  900
TGHSAKKKKA KS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-6079490723136Lysine-specific demethylase REF6
6a58_A4e-6079490723136Lysine-specific demethylase REF6
6a59_A4e-6079490723136Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689520.0AK068952.1 Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621377.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0E0JSH30.0A0A0E0JSH3_ORYPU; Uncharacterized protein
STRINGOPUNC01G39910.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.16e-58relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]