PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G35910.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 1272aa    MW: 136595 Da    PI: 6.0718
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G35910.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.7e-2811271179255
          G2-like    2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55  
                       +r++WtpeLH+rFveav++L G++ A+Pk+i++lm+v+gLt+e+v+SHLQkYRl
  OPUNC01G35910.3 1127 ARMVWTPELHHRFVEAVAHL-GEKGAVPKAIVRLMNVDGLTRENVASHLQKYRL 1179
                       79******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF079902.8E-155308722IPR012940Nucleic acid binding NABP
PROSITE profilePS5030384.4367031004IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.103.1E-53706847IPR011989Armadillo-like helical
SuperFamilySSF483717.48E-98706999IPR016024Armadillo-type fold
CDDcd079205.90E-1417181000IPR033712Pumilio, RNA binding domain
SMARTSM000251.6E-5723758IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030211.417723758IPR001313Pumilio RNA-binding repeat
PfamPF008061.5E-5724757IPR001313Pumilio RNA-binding repeat
SMARTSM000258.1E-7759794IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030210.974759794IPR001313Pumilio RNA-binding repeat
PfamPF008065.5E-7762791IPR001313Pumilio RNA-binding repeat
SMARTSM000255.1E-7795830IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030210.74795830IPR001313Pumilio RNA-binding repeat
PfamPF008069.1E-5796827IPR001313Pumilio RNA-binding repeat
SMARTSM0002513831863IPR001313Pumilio RNA-binding repeat
Gene3DG3DSA:1.25.10.101.6E-598481001IPR011989Armadillo-like helical
SMARTSM000251.1E-6865900IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.117865900IPR001313Pumilio RNA-binding repeat
PfamPF008063.9E-7866898IPR001313Pumilio RNA-binding repeat
SMARTSM000259.4E-6901936IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.481901936IPR001313Pumilio RNA-binding repeat
PfamPF008065.7E-4902928IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030211.067937978IPR001313Pumilio RNA-binding repeat
SMARTSM000252.1E-7943978IPR001313Pumilio RNA-binding repeat
PfamPF008067.7E-8951977IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5129412.29911231182IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2711251183IPR009057Homeodomain-like
SuperFamilySSF466891.24E-1711261183IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-2311271179IPR006447Myb domain, plants
PfamPF002496.2E-911281178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003729Molecular FunctionmRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1272 aa     Download sequence    Send to blast
MISASAVAMR GDMGGGGGDE GELEDELDAL LGTGGGGARR RGEDAGERER ELNMFRSGSA  60
PPTIEGSLNA ISGLLLGGGE AVVTAAAIPD AETLNGHGGL LSEDELRADP AYLSYYYSHG  120
NLNPRLPPPV LSKEDWRSTQ RLKAGVVGGI GDRRKVSPEE TGHEPTVGRP VFSQNAGFDQ  180
EEAARNDVGG AAEWVDGGGD GLIGLSLGRQ RSFADILQDN LGRRTPASEH PSRAASRNSF  240
LDNQELLNSA DNQYSMHNDI LEAQRAVGNV QNVSGLPSIN ASASQTFASV LGSSISRNAT  300
PDSHYVPRVP SPGLPPVGVR INSNEKKLNC SSSFNTVSSK AVEPDDILAA LSNMNMPKDG  360
ALSDGNSISQ SKFQREISDH QNISLDPKAI QVNKNQHSLM LEADTDYLGI PPISQPSNPS  420
FADINKNVAG LTNIRNSTNT RIDGHTEMQR SSTLSTRSYQ KSPSSSNASP GGSPAQHQNI  480
DNINSAFLNY GLSGYPLSPG LPSMMMNCMG SGNMPPLFES AAAASAIASL GADSRNLGNN  540
ILSSPTVSLS DVHNLGRTGN QTATGLLSPL SDPFYVQYLK ATQYAAQGTA NCSDPSLERG  600
FTGSQYGDLT AVQKAYIEAL LQQQKLYGMP LGKSTTSNHG YYGNLAFGMG MAYPGSPLGS  660
PVASPSGPGS PLRLSERNMR FPSNLRNLGG WNSDPSGYMN DNFPSSLLDE FKSNKVRSFE  720
LAEIASHVVE FSADQYGSRF IQQKLETATV EEKDMVFKEI MPQALSLMTD VFGNYVVQKF  780
FEHGSAAQRR ELADQLFGHV LALSLQMYGC RVIQKAIEVV DLDQKTKMVT ELDGHIMRCV  840
RDQNGNHRVL EHCTDPKTQE IVMDEILQSV CMLAQDQYGN YVVQHVLEHG KPHERSIIIE  900
KLAGQIIQMS QQKFASNVVE KCLTFGGPAE REVLINEMLG TTDENEPLQA MMKDQFGNYV  960
VQKVLETCDD QQRELILSRV KVHLSALKKY TYGKHIVARV MLSARGGRPH DADAPSPSSS  1020
SSSSSPSRRM VGSAAAAGDA CGRVMEWETG LPAPGEMTPI SHQLVPPALA AAFGIDLAAV  1080
LLPSPSVDSP VSHLFFPVDD EDDDEDDGRG RGVTMTPPPP PRTAAAARMV WTPELHHRFV  1140
EAVAHLGEKG AVPKAIVRLM NVDGLTRENV ASHLQKYRLY LKRTRVAATP SPSPPPPPPP  1200
LPPAMYVPCF AAKPPLDAAN RSDSPPSRTS DATTKQGENA TRSRRAWAPE TNPQFVAGSA  1260
TRAPPSRSRV GR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gvo_A1e-10570510005339Pumilio homolog 2
3gvt_A1e-10570510005339Pumilio homolog 2
3gvt_B1e-10570510005339Pumilio homolog 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. Binds the APUM-binding elements (APBEs) in the 3'-UTR mRNA sequence of CLV1, PNH, WUS and FAS2. {ECO:0000269|PubMed:19682068}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0998010.0AK099801.1 Oryza sativa Japonica Group cDNA clone:J013098A15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611225.10.0pumilio homolog 1
SwissprotQ9ZW070.0PUM1_ARATH; Pumilio homolog 1
TrEMBLA0A0E0JQY30.0A0A0E0JQY3_ORYPU; Uncharacterized protein
STRINGOPUNC01G35910.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.15e-24G2-like family protein
Publications ? help Back to Top
  1. Tam PP, et al.
    The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization.
    BMC Plant Biol., 2010. 10: p. 44
    [PMID:20214804]
  2. Wang M,Ogé L,Perez-Garcia MD,Hamama L,Sakr S
    The PUF Protein Family: Overview on PUF RNA Targets, Biological Functions, and Post Transcriptional Regulation.
    Int J Mol Sci, 2018.
    [PMID:29385744]