PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G34290.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 336aa    MW: 35894.7 Da    PI: 6.713
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G34290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.21.2e-21127188258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SS.TTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.ed.pkvveitYegeHnh 58 
                      dDgy+WrKYGqK++++++fprsYYrC++    +Cp++k+v++ + +d p + +++Y+ eH++
  OPUNC01G34290.1 127 DDGYQWRKYGQKKINNTNFPRSYYRCSYYrerRCPAQKHVQQRDgSDvPALHVVVYTHEHTC 188
                      8**************************987889*******987523436788999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-24112188IPR003657WRKY domain
SuperFamilySSF1182904.45E-21121188IPR003657WRKY domain
SMARTSM007747.9E-30126190IPR003657WRKY domain
PfamPF031061.5E-22127188IPR003657WRKY domain
PROSITE profilePS5081117.523127189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MQAQSRLAFA ASGGSGGGNS DISFGGAASP RAGGEEHEAV VRELTRGHEL TARLRAEALR  60
ALRGQGQAEA TATFILGEVS RAFTVCLSIM ASASPSSPRP GTPLLPTRAA REDNVPRKRL  120
LTASPYDDGY QWRKYGQKKI NNTNFPRSYY RCSYYRERRC PAQKHVQQRD GSDVPALHVV  180
VYTHEHTCLQ GAPAELPDAT NSGGAASPDF FPAGGETQSS LRRRCAAQVV GGARPQFVDH  240
RAAMEERERQ VLVSSLARVL QGRQCYDVDP DDVDSRGAVS AVHAPAATPV AASSSSGLPA  300
GPVDAADEAL DVMDYDVTDA LFWGPFGTDS NSDTLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-14127188968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-153CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877887.11e-144probable WRKY transcription factor 4
TrEMBLA0A0E0JQD40.0A0A0E0JQD4_ORYPU; Uncharacterized protein
STRINGOPUNC01G34290.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.29e-09WRKY family protein