PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OPUNC01G31990.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 401aa MW: 44217 Da PI: 10.5197

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G31990.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	325	345	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + +L++H++++ OPUNC01G31990.1 325 RCSQCGKEF-KPQELHSHMQSC 345 6******.*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	2.6E-33	19	168	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MEKDGGSQKG GGGGEVRRIN VVYFLSRGGR TDHPHLFRVN HHRAGVRLRD VKSWLSELRG 60 QDMADNFSWS YKRKYKAGYI WQDLMMDDDL ITPISDNEYV IKGCDVRRAT ESPKEKSSSL 120 AEEPKQLKVA CDQKQVKEVV IQVTTTASVS DERSPKTPPP ADQDSPIGEC GEPAPRRTAP 180 FKKDLSSRGL HEEKKKQRRE VVKAVSKAVV VPAPEQKVKG AASGRISNHP PPAVGRARRM 240 HLAQLLHNLL TCGAADTDDT ALRPVLRHGA SDDHGDWPRT PVCPGIDGCG LRVGKKVKVR 300 RGGKDKAKQK RDDGGDSHKP ASLPRCSQCG KEFKPQELHS HMQSCRVFRE KMRSSTSSRV 360 SVDRGRSSAA ARPEHRRTRS KGAAAGDTSD RPSAALLLRD S

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MEKDGGSQKG GGGGEVRRIN VVYFLSRGGR TDHPHLFRVN HHRAGVRLRD VKSWLSELRG  60
QDMADNFSWS YKRKYKAGYI WQDLMMDDDL ITPISDNEYV IKGCDVRRAT ESPKEKSSSL  120
AEEPKQLKVA CDQKQVKEVV IQVTTTASVS DERSPKTPPP ADQDSPIGEC GEPAPRRTAP  180
FKKDLSSRGL HEEKKKQRRE VVKAVSKAVV VPAPEQKVKG AASGRISNHP PPAVGRARRM  240
HLAQLLHNLL TCGAADTDDT ALRPVLRHGA SDDHGDWPRT PVCPGIDGCG LRVGKKVKVR  300
RGGKDKAKQK RDDGGDSHKP ASLPRCSQCG KEFKPQELHS HMQSCRVFRE KMRSSTSSRV  360
SVDRGRSSAA ARPEHRRTRS KGAAAGDTSD RPSAALLLRD S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241481	0.0	AK241481.1 Oryza sativa Japonica Group cDNA, clone: J065166E16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633111.1	0.0	protein UPSTREAM OF FLC
Refseq	XP_025877314.1	0.0	protein UPSTREAM OF FLC
TrEMBL	A0A0E0JPH0	0.0	A0A0E0JPH0_ORYPU; Uncharacterized protein
STRING	OPUNC01G31990.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10794	12	13