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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC01G30950.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
TCP |
Protein Properties |
Length: 298aa MW: 31467.1 Da PI: 7.4829 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC01G30950.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 96.1 | 6.7e-30 | 54 | 130 | 3 | 79 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesss 79
g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ + +++
OPUNC01G30950.1 54 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDHLCMGHHL 130
78*************************************************************99999444222222 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009965 | Biological Process | leaf morphogenesis |
GO:0030154 | Biological Process | cell differentiation |
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MILGSNQAAA AAAAAAAEEE AAELARKHTA AVATSRQWSA QTESRIVRVS RVFGGKDRHS 60 KVKTVKGLRD RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD WLLNAARHEI DKLPPLQFPP 120 QDHLCMGHHL PSAMPLMHHH HHHHHADDDK YHVTAAAAVL AAEKGATGGG DDVDGGGGSG 180 AAHMVGRFPA GGYHRFMGLN NPLGMVNSAG AAMPFHYAGE SWNNGSVQDS GAGSPQVAAA 240 AAAAHHTSPF PSLLSLAPGS HHQLVFYSSE AEQFTVDNLG SQSLSLSSAR AFHDQTGS
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK071964 | 0.0 | AK071964.1 Oryza sativa Japonica Group cDNA clone:J013079O19, full insert sequence. |
GenBank | AP003274 | 0.0 | AP003274.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0512C01. |
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
GenBank | CT832213 | 0.0 | CT832213.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN047P02, full insert sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G60970.1 | 9e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |