PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 306aa MW: 33261.7 Da PI: 9.6742

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G28080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.1	3.6e-12	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+e l ++v ++G+g W+tI + R+ ++k++w+++ OPUNC01G28080.1 5 KQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56 79*********************************9**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.498	1	60	IPR017930	Myb domain
SuperFamily	SSF46689	1.36E-14	2	58	IPR009057	Homeodomain-like
SMART	SM00717	5.5E-8	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-8	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	8.58E-21	6	56	No hit	No description
SMART	SM00526	1.7E-12	112	177	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	24.925	114	182	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	6.5E-13	114	188	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	2.8E-8	116	174	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46689	1.36E-14	116	151	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGAPKQKWTS EEEEALRRGV LKHGPGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA 60 SGLGSRDKLK VPRIKGPSSS TSPSSQTPLL VLPPNKVAEA SPSADPEKSS QDVKIPKYSS 120 MVIEALCEIG DPNGSDVDAI CHYIEQRHEV QANFRRLLTA KLRRLIAAKK IEKIDRSYRI 180 TESYAAKVSQ ANKSPSPKKD PAKPLKASQN LGSFAGTSPA LEAAAAAAMK VADAEAKSHL 240 ANEHMTEAER IFKLAEETES LVTLATEIYE RCSRGEILTI MQVAQSNFEF QSVSGNGSGT 300 GSTVLA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00652	PBM	Transfer from LOC_Os01g51154	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ495797	0.0	AJ495797.1 Oryza sativa Japonica Group mRNA for MYB28 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622156.1	0.0	single myb histone 4 isoform X1
Swissprot	Q6WLH4	1e-111	SMH3_MAIZE; Single myb histone 3
TrEMBL	A0A0E0JN19	0.0	A0A0E0JN19_ORYPU; Uncharacterized protein
TrEMBL	B8A8C4	0.0	B8A8C4_ORYSI; Uncharacterized protein
TrEMBL	I1NR47	0.0	I1NR47_ORYGL; Uncharacterized protein
STRING	OPUNC01G28080.1	0.0	(Oryza punctata)
STRING	ORGLA01G0233700.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9247	34	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72740.2	4e-49	MYB_related family protein

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]