PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G26130.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 332aa    MW: 35970.3 Da    PI: 10.1778
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G26130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.24.2e-1318104186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++ e+ aL++   ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         s++ ++++l+
  OPUNC01G26130.1  18 CWSDGETAALVDSWGRRYVDLNRGSLRQPQWREVAEAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGTP------SSWYFYRDLD 104
                      7*******************************************999999********************9998775......4588888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2416105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDGKPPPPNP NLPYREDCWS DGETAALVDS WGRRYVDLNR GSLRQPQWRE VAEAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGTPSSWYFY RDLDMLVGPT LSAAAGGGGG  120
GGGGSAKKPS PTRGLPMMRR RLESPSRSPS PPSPTPAVAL PLPNYRQASN LPSAGLLFNK  180
MAAAAAAESD SEDGYNNPNN NYEDDEDDGS QQSASRSVSS RSGGGAAAGA GGGVSSSKRK  240
RGGGGGFGEL ARAVETFAEM YERMEFAKQR HAEEMERQRI KFLKDLELKR MQAFVDVQLQ  300
LAKAKHRKHP DGASEMLMSL AALPFLSTPA YL
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0993960.0AK099396.1 Oryza sativa Japonica Group cDNA clone:J013000M14, full insert sequence.
GenBankAP0032640.0AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614545.11e-171trihelix transcription factor ASIL2
SwissprotQ9LJG83e-31ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0E0JMB00.0A0A0E0JMB0_ORYPU; Uncharacterized protein
STRINGOPUNC01G26130.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.14e-27sequence-specific DNA binding transcription factors