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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC01G25730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 480aa MW: 48745.6 Da PI: 6.6662 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.5 | 1.6e-06 | 71 | 89 | 39 | 57 |
S-HHHHHHHHHHHHHHHHC CS Homeobox 39 LterqVkvWFqNrRakekk 57 + +++V++WFqNr+ + k+ OPUNC01G25730.1 71 VGDANVFYWFQNRKSRSKN 89 6789************995 PP | |||||||
2 | Wus_type_Homeobox | 42.9 | 1.2e-14 | 66 | 90 | 40 | 64 |
Wus_type_Homeobox 40 eeyGkiedkNVfyWFQNrkaRerqk 64 +eyG+++d+NVfyWFQNrk+R+++k OPUNC01G25730.1 66 SEYGQVGDANVFYWFQNRKSRSKNK 90 79*********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGGGG YSGLKSSPFS 60 SGLAASEYGQ VGDANVFYWF QNRKSRSKNK LRSGTGRAAL GLGSNRPCAT APREAVAPSF 120 TPPPILPPQP VQQQQQQLVS PVAAPTSSSS SSSDRSSGSS KPVRATSSQA MSVTAAMDLL 180 SPLAAACEQQ MLYQGQPLES PSAPAPAPAP RVHGIVAPDE PIFLQWPQSP CLSAVDLGAA 240 ILGGQYMHLP VPAAQPPSSP GAGGMFWGLC NDVSAPNNTG HKSCAWSAGL GQHWCGSADQ 300 LGLGKSSAAS IAAGLSRPEE AHDVDATKLG LLQYGFGITT PTVHVDVTSS AAGVLPPVPS 360 SLSPPDATVT VASVAATASL TDFAASAIST GAVANNQLQG LADFGLVAGG SGAGVVCVGV 420 AGAAPPLFYP AAHFNVRHYF GDEAELLRYR GDSRTEPVPV DESGVTVEPL QQGAVYIVLM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025875666.1 | 0.0 | WUSCHEL-related homeobox 7 | ||||
Swissprot | Q0JKK6 | 0.0 | WOX7_ORYSJ; WUSCHEL-related homeobox 7 | ||||
TrEMBL | A0A0E0JM59 | 0.0 | A0A0E0JM59_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC01G25730.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 9e-14 | homeobox-3 |