PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 366aa MW: 38675.5 Da PI: 6.9431

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G23530.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.2e-32	201	258	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ OPUNC01G23530.1 201 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 258 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.7E-34	185	260	IPR003657	WRKY domain
SuperFamily	SSF118290	7.59E-29	193	260	IPR003657	WRKY domain
PROSITE profile	PS50811	31.066	195	260	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	200	259	IPR003657	WRKY domain
Pfam	PF03106	2.2E-25	201	258	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MSSGGGGGDR HGPYHQHGHL GRGDGGADYV YSSSDMESFF FSQSGGVGVG GDGGGAGAGG 60 ADEIMPYSSI TDYLQGFLDP SGLARHLDMA CPSSQDTAVK QELSVDVTSH DSQGTGGVAG 120 EGVAQATPNS SASFSSSDGE AEGGKSRRCK KGQVKAEEED EKDEEDGENS KKPNKPKKKA 180 EKRQRQPRVA FLTKSEVDHL EDGYRWRKYG QKAVKNSPYP RSYYRCTTPK CGVKKRVERS 240 YQDPSTVITT YEGQHTHHSP ASLRGGGGGI GGHHHHLFMP GVHGLPPSHL MPAGFHPELM 300 GLMHHPAMAA AANPSTHFPG VAASAPPPAA AGGAMPNDHP PLQQHHFTDY ALLQDLFPAT 360 MPSSNP

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MSSGGGGGDR HGPYHQHGHL GRGDGGADYV YSSSDMESFF FSQSGGVGVG GDGGGAGAGG  60
ADEIMPYSSI TDYLQGFLDP SGLARHLDMA CPSSQDTAVK QELSVDVTSH DSQGTGGVAG  120
EGVAQATPNS SASFSSSDGE AEGGKSRRCK KGQVKAEEED EKDEEDGENS KKPNKPKKKA  180
EKRQRQPRVA FLTKSEVDHL EDGYRWRKYG QKAVKNSPYP RSYYRCTTPK CGVKKRVERS  240
YQDPSTVITT YEGQHTHHSP ASLRGGGGGI GGHHHHLFMP GVHGLPPSHL MPAGFHPELM  300
GLMHHPAMAA AANPSTHFPG VAASAPPPAA AGGAMPNDHP PLQQHHFTDY ALLQDLFPAT  360
MPSSNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-29	193	261	10	78	Probable WRKY transcription factor 4
2lex_A	3e-29	193	261	10	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108745	0.0	AK108745.1 Oryza sativa Japonica Group cDNA clone:002-150-E09, full insert sequence.
GenBank	AY341856	0.0	AY341856.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626307.1	1e-174	WRKY transcription factor 71
Swissprot	Q8VWJ2	4e-50	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A0E0JLE2	0.0	A0A0E0JLE2_ORYPU; Uncharacterized protein
STRING	OPUNC01G23530.2	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	4e-42	WRKY DNA-binding protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]