PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 862aa MW: 96128.7 Da PI: 6.856

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC01G11960.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	115.9	2.1e-36	106	183	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC++dls+a++y++rhkvCevh+k+ vv ++++e+rfCqqCsrf l+efDe+k+sCr+rLa+hn+rrrk q OPUNC01G11960.3 106 CCQVDGCTVDLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFQFLQEFDEGKKSCRSRLAQHNRRRRKVQV 183 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-27	101	168	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.804	104	181	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.29E-34	105	184	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.9E-28	107	180	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.65E-5	594	742	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.5E-4	602	741	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.74E-4	675	740	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence Send to blast
MASGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRLS 60 PEDDDREECI NAATTNGDDG QIAVQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVDLSSAR 120 DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFQFLQEF DEGKKSCRSR LAQHNRRRRK 180 VQVQAGVDVN SLRENHSLSN TLLLLLKQLS GLDSSGPSEQ INGPNHLTNL VKNLAALAGT 240 QRNQDMLKNA NSAAIASHTG NYVANGNSLH DSRPHIPVGT ESTAEEPTVE RRVQNFDLND 300 AYVEGDENRT DKIVFKLFGK EPNDFPSDLR AQILNWLSNC PSDIESYIRP GCIILTIYLR 360 LPNWMWDKLA ADPAHWIQKL ISLSTDDLWR TGWMYARVQD YLTLSCNGSL MLESPWQPAI 420 GNKHQILFIT PIAVACSSTA NFSVKGLNIA QPTTKLLCMF GGKYLIQEAT EKLLDDTRMQ 480 RGPQCLTFSC SFPSTTGRGF IEVEDYDQSS LSFPFVVAEQ DVCSEIRTLE HLLNLVSFDD 540 TLVDRNDLFA SRDRALNFLH EFGWFLQRSH IRATSETPKD CTEGFPAARF RWLLSFAVDL 600 EFCAVVKKLL DTLFQGGVDL DVQSTVEFVL EQDLVFVAVN KRSKPLIDFL LMYTTNSAPM 660 DKTESAAPVQ FLFTPDIAGP SDITPLHIAA TYSDAAGVLD ALTDDPQQLG IKAWKNARDA 720 TGLTPEDYAR KRGHESYIQM VQNKIDSRLP KAHVSVTITS TTSTINTTEK HASRSKPTDQ 780 TTFDVEKGQQ ISAKPPLSCR QCLPELAYRH HSNRFLSTRP AVLSLVAIAA VCVCVGLIMQ 840 GPPHIGGMRG PFRWNSLSSG PK

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence Send to blast

MASGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRLS  60
PEDDDREECI NAATTNGDDG QIAVQRGRSS EDEMPRQGAC SSSGPCCQVD GCTVDLSSAR  120
DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFQFLQEF DEGKKSCRSR LAQHNRRRRK  180
VQVQAGVDVN SLRENHSLSN TLLLLLKQLS GLDSSGPSEQ INGPNHLTNL VKNLAALAGT  240
QRNQDMLKNA NSAAIASHTG NYVANGNSLH DSRPHIPVGT ESTAEEPTVE RRVQNFDLND  300
AYVEGDENRT DKIVFKLFGK EPNDFPSDLR AQILNWLSNC PSDIESYIRP GCIILTIYLR  360
LPNWMWDKLA ADPAHWIQKL ISLSTDDLWR TGWMYARVQD YLTLSCNGSL MLESPWQPAI  420
GNKHQILFIT PIAVACSSTA NFSVKGLNIA QPTTKLLCMF GGKYLIQEAT EKLLDDTRMQ  480
RGPQCLTFSC SFPSTTGRGF IEVEDYDQSS LSFPFVVAEQ DVCSEIRTLE HLLNLVSFDD  540
TLVDRNDLFA SRDRALNFLH EFGWFLQRSH IRATSETPKD CTEGFPAARF RWLLSFAVDL  600
EFCAVVKKLL DTLFQGGVDL DVQSTVEFVL EQDLVFVAVN KRSKPLIDFL LMYTTNSAPM  660
DKTESAAPVQ FLFTPDIAGP SDITPLHIAA TYSDAAGVLD ALTDDPQQLG IKAWKNARDA  720
TGLTPEDYAR KRGHESYIQM VQNKIDSRLP KAHVSVTITS TTSTINTTEK HASRSKPTDQ  780
TTFDVEKGQQ ISAKPPLSCR QCLPELAYRH HSNRFLSTRP AVLSLVAIAA VCVCVGLIMQ  840
GPPHIGGMRG PFRWNSLSSG PK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-25	98	180	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	58	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068471	0.0	AK068471.1 Oryza sativa Japonica Group cDNA clone:J013155F18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614292.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_015614297.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Refseq	XP_025880633.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0E0JHD6	0.0	A0A0E0JHD6_ORYPU; Uncharacterized protein
STRING	OPUNC01G11960.1	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]