PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G10020.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 621aa    MW: 68812.2 Da    PI: 6.5154
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G10020.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.23.5e-491232483128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       Gf FhP+d el+ +yLkkk++g+k+e  e+i+evdiyk+ePwdLp+   v +++++w+fF+ rd+ky++g+r+nrat +gyWk+tgkd++++ 
  OPUNC01G10020.3 123 GGFGFHPKDTELIFHYLKKKIHGQKIEY-EIIPEVDIYKHEPWDLPAkcDVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAIKM 215
                      69**************************.99***************5356667999*************************************9 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++++g+kktLvf++gr p+g++t+W+mhey +
  OPUNC01G10020.3 216 -DKRTIGTKKTLVFHEGRPPTGRRTEWIMHEYYI 248
                      .999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-56116271IPR003441NAC domain
PROSITE profilePS5100552.995121271IPR003441NAC domain
PfamPF023651.1E-22124247IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGPTHQAPTQ WAPRVSRTRS AARPPPSVAS SLLRLPRHPS SSSPFFFSLH LLRLRLGLAA  60
AAFLFARSLP LSRLAIHGEP AVVVHPDAPR LARAKLRLFL PDARAGGTGE SSRRAAALIL  120
LLGGFGFHPK DTELIFHYLK KKIHGQKIEY EIIPEVDIYK HEPWDLPAKC DVPTQDNKWH  180
FFAARDRKYP NGSRSNRATV AGYWKSTGKD RAIKMDKRTI GTKKTLVFHE GRPPTGRRTE  240
WIMHEYYIDE RECQACPDMK DAFVLCRVTK RNDWISGNGN ELDNSDPHPE PIDAAPSVVA  300
PIVGAEQLNG EATPVIVAEP PDGVTTSTIT ADIPSPSDGI NLDEWLNELF DPFFDPEQSL  360
ASADLSPDEQ NVESSNAGAL APKVEQDYSP KVEQDYSSPN ENIEDDTEYL LTEDVYNILH  420
PGTDDFNMLQ NPMDQEALAF PYQYLTGGMD PFDLANNFGS GIHQEELWSP QANTEPSQAN  480
EAADNGITRR YRHVKTPETS ALQYKGKTLA KMQVGINKMA TSSSESINQT IKFENNSGRL  540
VEHQKNQTHD VASTKRSDAG KPSTELSSNR GFLRGIRNAF AGCSDARWNI ILVAVFAIGV  600
AMVALHVGQR LGLSQRDQQH A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-411122746172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8308860.0CT830886.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649784.10.0NAC domain-containing protein 74
SwissprotQ7GCL70.0NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A0E0JGN50.0A0A0E0JGN5_ORYPU; Uncharacterized protein
STRINGOPUNC01G10020.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.17e-60NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]