PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G09770.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 585aa    MW: 63028.9 Da    PI: 9.2379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G09770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.5e-10171197127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C +++rtG C yG++C+++H++
  OPUNC01G09770.1 171 PGEADCVYYLRTGACGYGENCRYNHPR 197
                      57899********************96 PP
2zf-CCCH36.96.1e-12221247127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C +++++GtCk+G++Ck+ H++
  OPUNC01G09770.1 221 PGQPVCEYYMKNGTCKFGSNCKYDHPR 247
                      5789*********************96 PP
3zf-CCCH339.9e-11266291227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ +tG+Ck+G++CkF+H++
  OPUNC01G09770.1 266 GEKDCTYYVKTGHCKFGSTCKFHHPE 291
                      5789********************96 PP
4zf-CCCH36.96.1e-12419445127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG Ck+G+ Ck++H++
  OPUNC01G09770.1 419 PGQPECQYYLKTGSCKFGSACKYHHPQ 445
                      5789*********************97 PP
5zf-CCCH28.23.2e-09467491327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +C ++ + G+Ck+G++CkF H++
  OPUNC01G09770.1 467 SQPCAYYTQHGFCKFGPTCKFDHPM 491
                      679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.211170198IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6170197IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7172197IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6174198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4176197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765220248IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7220247IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9222247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6223248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5225248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502264292IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5264291IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8266291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5267290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4270290IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6418445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413418446IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9420445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5422445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69464492IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5464491IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-7466491IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6466494IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-5468489IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MAATVTTTAH SMRETRLFRF APSSPPLRFP FPSLPLSPWR LLHRRCFALS HSRGEERRKP  60
RDSRRGDRTA AARRRRRRSA EQATPRFWWG GERRGGGPPI SPPSPHDSVS DRRLRERAGE  120
GGEVWGVMEP YAAAEGGGGG GTDTGLEESM WRMGLGGGGE AAAAGRLPER PGEADCVYYL  180
RTGACGYGEN CRYNHPRDRA AAAALNGGGK TTHSAEYPER PGQPVCEYYM KNGTCKFGSN  240
CKYDHPREGS VQAVMLNSSG YPLRSGEKDC TYYVKTGHCK FGSTCKFHHP EIGGVSETPN  300
MYPPVQPQPI SSSHPYQHLA GWQMGRPPVL PGSFLSGSYP PMMLPSTVVP MQGWNPYISP  360
VNQVASAGGH QTVQAGPFYG LSHQGPSSAV TYGSQYAPLS SSAVPSSSSK QEPAFPARPG  420
QPECQYYLKT GSCKFGSACK YHHPQYLNTP KSNCMLSPLG LPLRPGSQPC AYYTQHGFCK  480
FGPTCKFDHP MGTLSYSPSA SSITDLPIAP YPLNFAVAPV APPSSSSDLR PEYLLTKEFS  540
ANQSASPGTT CGPAGAMLKA YAPHMLIRPQ TSGASGIVTT HGGEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15677RRKPRDSRRGDRTAAARRRRRR
27277RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739200.0AK073920.1 Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622429.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0E0JGJ30.0A0A0E0JGJ3_ORYPU; Uncharacterized protein
STRINGOPUNC01G09770.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-106C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]