PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G08460.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 799aa    MW: 86498 Da    PI: 9.5075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G08460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12645691455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  OPUNC01G08460.1 645 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 691
                      799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.3E-50241426IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831641690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18644708IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.52E-15644695No hitNo description
PfamPF000105.2E-10645691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-18645704IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16647696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MLVEHATTLY ESPSREEPRG RRSSRLLHPP PPNEPRLVSC RLGSGSNPTG VEKARPPSFS  60
FHTSPPPPLS PHHKSPPSSA PEIPSRTRET RGTTTTTTTA SCARGEFGDP RASVGGGGEI  120
RASPSPGVLG FSHQRRGEGG ARLFFSRGAG KERGPVRPGF RRRGADWGAG APARWGLRRE  180
EEEGRMEVDE DGANGGTGGT WTDEDRALSA SVLGTDAFAY LTKGGGAISE GLVAASLPVD  240
LQNRLQELVE SDRPGAGWNY AIFWQLSRTK SGDLVLGWGD GSCREPRDGE MGPAASAGSD  300
EAKQRMRKRV LQRLHSAFGG VDEEDYAPGI DQVTDTEMFF LASMYFAFPR RAGGPGQVFA  360
AGVPLWIPNT ERNVFPANYC YRGYLANAAG FRTIVLVPFE SGVLELGSMQ QVAESSDTLQ  420
TIRSVFAGAI GNKAGVQRHE GNGPADKSPG LAKIFGKDLN LGRPSAGPGT GVSKADERSW  480
EQRTAGGGSS LLPNVQRGLQ NFTWSQARGL NSHQQKFGNG ILIVSNEATP RNNGVVDSPT  540
ATQFQLQKAS PLQKLPQLQK PHQIVKPQQL VSQQQLQPQA PRQIDFSAGT SSKPGVLTKK  600
PAGIDGEGAE VDGLCKDEGP PPAIEDRRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR  660
FYALRAVVPN ISKMDKASLL GDAITYITDL QKKLKEMEVE RERLIESGMV DPRERTPRPE  720
VDIQVVQDEV LVRVMSPMEN HPVRAIFQAF EEAEVHAGES KITSNNGTAV HSFIIKCPGA  780
EQQTREKVIA AMSRAMNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-252414269192Transcription factor MYC3
4rqw_B7e-252414269192Transcription factor MYC3
4rs9_A7e-252414269192Transcription factor MYC3
4yz6_A7e-252414269192Transcription factor MYC3
5gnj_A3e-26639701264Transcription factor MYC2
5gnj_B3e-26639701264Transcription factor MYC2
5gnj_E3e-26639701264Transcription factor MYC2
5gnj_F3e-26639701264Transcription factor MYC2
5gnj_G3e-26639701264Transcription factor MYC2
5gnj_I3e-26639701264Transcription factor MYC2
5gnj_M3e-26639701264Transcription factor MYC2
5gnj_N3e-26639701264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1626634RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621308.10.0transcription factor bHLH13
TrEMBLA0A0E0JG390.0A0A0E0JG39_ORYPU; Uncharacterized protein
STRINGOPUNC01G08460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-69bHLH family protein