PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G06330.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 690aa    MW: 72168.5 Da    PI: 5.804
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G06330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.71.6e-05444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      C+ +e  e++  C  ++  lC+ C l  H        H +
  OPUNC01G06330.1  4 LCSACEAAEARVLCCADEAALCARCDLDVHAAnrlagkHHR 44
                     7******99*********************55677778554 PP
2zf-B_box29.41.7e-095697237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     ++++C+ ++e ++ +fC +++ llC++C ++ H        H
  OPUNC01G06330.1 56 SPPNCDICQETHAYFFCVEDRALLCRTCDVAVHTAnafvssH 97
                     6799******99*******************99545566666 PP
3zf-B_box29.41.7e-09365406237
         zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                      ++++C+ ++e ++ +fC +++ llC++C ++ H        H
  OPUNC01G06330.1 365 SPPNCDICQETHAYFFCVEDRALLCRTCDVAVHTAnafvssH 406
                      6799******99*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.58147IPR000315B-box-type zinc finger
SMARTSM003365.7E-8147IPR000315B-box-type zinc finger
CDDcd000217.15E-6344No hitNo description
SMARTSM003363.3E-1555102IPR000315B-box-type zinc finger
PROSITE profilePS501199.65555102IPR000315B-box-type zinc finger
PfamPF006431.6E-75797IPR000315B-box-type zinc finger
CDDcd000211.23E-860102No hitNo description
SMARTSM003363.3E-15364411IPR000315B-box-type zinc finger
PROSITE profilePS501199.655364411IPR000315B-box-type zinc finger
PfamPF006431.6E-7366406IPR000315B-box-type zinc finger
CDDcd000211.23E-8369411No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCARCDL DVHAANRLAG KHHRLPLLSS SSSSSSPPNC  60
DICQETHAYF FCVEDRALLC RTCDVAVHTA NAFVSSHRRF LLTGVQVGLD NPTPTAHDDD  120
DEHHHPHPLS SSSSPPRNTA SSAPPMQQQP PPQPPCARKR SPSPLYSDDD VIDWATGGHD  180
VSITANLPDW SLVDEQFTTT APPVRQAAAT AEPVMIKTAP KRASCGHVTA GTAAVLGNLA  240
GLAGGSPDWP LDEFFGFADF NSGFAFAENG TSKADSGKLG SMDGSPNGGR SSSSSSSAAA  300
ATAAGQDFFG QVPEVHWTVP ELPSPPTASG LHWQREPRYG GGGGATDAGA HHRLPLLSSS  360
SSSSSPPNCD ICQETHAYFF CVEDRALLCR TCDVAVHTAN AFVSSHRRFL LTGVQVGLDN  420
PTPTAHDDDD EHHHPHPLSS SSSPPRNTAS SAPPMQQQPP PQPPCARKRS PSPLYSDDDV  480
IDWATGGHDV SITANLPDWS LVDEQFTTTA PPVRQAAATA EPVMIKTAPK RASCGHVTAG  540
TAAVLGNLAG LAGGSPDWPL DEFFGFADFN SGFAFAENGT SKADSGKLGS MDGSPNGGRS  600
SSSSSSAAAA TAAGQDFFGQ VPEVHWTVPE LPSPPTASGL HWQREPRYGG GGGATDAGAV  660
FVPDISSPEN PFRCFAAGAG DHTMKRRRRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2421761e-145AK242176.1 Oryza sativa Japonica Group cDNA, clone: J075159I15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696384.11e-148PREDICTED: LOW QUALITY PROTEIN: B-box zinc finger protein 22
TrEMBLA0A0E0JFB40.0A0A0E0JFB4_ORYPU; Uncharacterized protein
STRINGOPUNC01G06330.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-40light-regulated zinc finger protein 1