PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G05730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 395aa    MW: 41940.1 Da    PI: 7.1031
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G05730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.9e-08129149526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd C +aHg
  OPUNC01G05730.1 129 ACPDFRK-GGCKRGDACEYAHG 149
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103125151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5128151IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6129149IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258159183IPR000571Zinc finger, CCCH-type
SMARTSM0035612159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MMMMGEGVSS VPPWSHLPVS GVDVLGGGGG GGGGGGVGGG DEMTPYLIAA LREYLPANDV  60
GVGVDDEEEA AAMAAAVDAY ACDEFRMYEF KVRRCARGRS HDWTECPFAH PGEKARRRDP  120
RKYHYSGTAC PDFRKGGCKR GDACEYAHGV FECWLHPARY RTQPCKDGTA CRRRVCFFAH  180
TPDQLRVLPA QQSSPRSVAS SPLAESYDGS PLRRQAFESY LTKTIISSSP TSTLMSPPKS  240
PPSESPPLSP DGAAAIRRGS WPGVGSPVND VLASFRQLRL SKVKSSPSGG WSYPASSAVY  300
GSPKAATGLY SLPTTPLAST TTVTTAASFM PNLEPLDLGL IGDEEPVQRV ESGRALREKV  360
FERLSRDGAI SGDATAAAMN AGVGLDVAWV SDLIN
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007700.0AK100770.1 Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence.
GenBankAP0027460.0AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879384.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0E0JF390.0A0A0E0JF39_ORYPU; Uncharacterized protein
STRINGOPUNC01G05730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-82C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]