PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G01740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 336aa    MW: 36446.5 Da    PI: 4.4434
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G01740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-12114156147
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaai 47 
                      ++y+GVr +k +g+W+AeIr  +     +  r +lg+f ta+ A +a+ 
  OPUNC01G01740.1 114 TCYRGVRLRK-WGKWAAEIRNpF-----TgHREWLGTFETADAASAAYQ 156
                      68******99.**********55.....45999*******666666664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-7114155IPR001471AP2/ERF domain
PROSITE profilePS5103217.227115175IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-14115164IPR016177DNA-binding domain
SMARTSM003802.0E-12115178IPR001471AP2/ERF domain
CDDcd000184.66E-14116147No hitNo description
Gene3DG3DSA:3.30.730.101.9E-18116166IPR001471AP2/ERF domain
PRINTSPR003676.0E-8116127IPR001471AP2/ERF domain
PRINTSPR003676.0E-8138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAPSKQQQML LKKVMSKKPK TKRLSGFGLK PSAAFSRPQA LQAAAASLQP SRRVRVVFDD  60
PDATDSDSDD EEDAGASKKR YFELFIGKQA SSTKQACPAS TVAAYANIGK VGSTCYRGVR  120
LRKWGKWAAE IRNPFTGHRE WLGTFETADA ASAAYQSASR SFAEEKRRRG VVSSASPASS  180
ATPTPSASSS SSTSAGPFAH PSPSSVLEAT KPVPKPESPP EQAATPNLVE ATNETAELPD  240
DPEFYKDILR GLQLPDIDPM DFRAGLDALD ISDVPAYMDG EQDILFTEDM LLGDFAEEDD  300
LDLDDIADDF CEDFPEIPSG YDFGRGDMFR QVDFCV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1196450.0AK119645.1 Oryza sativa Japonica Group cDNA clone:002-130-G05, full insert sequence.
GenBankAP0025260.0AP002526.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0504H10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3418280.0AY341828.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP210 mRNA, complete cds.
GenBankEU8372590.0EU837259.1 Oryza sativa Japonica Group clone KCS234C10 AP2 domain containing protein mRNA, complete cds.
GenBankKC9883300.0KC988330.1 Oryza sativa AP2 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616539.11e-176ethylene-responsive transcription factor ERF118
TrEMBLA0A0E0JDN80.0A0A0E0JDN8_ORYPU; Uncharacterized protein
STRINGOPUNC01G01740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-11ERF family protein