PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC01G00700.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 267aa    MW: 28109.4 Da    PI: 6.7801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC01G00700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.9e-10184227755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  OPUNC01G00700.1 184 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 227
                      67799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.41E-12175231No hitNo description
SuperFamilySSF474595.1E-14175238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.983177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-12178235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6184227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAAQASSKRA MLPREPVLYD DEPSMPLELL GYHGNGGGGG GCVDADYYYS WSGSSSSSSS  60
SVLSFDQAAI GGCARQLAFH PGGDDDDCAM WMDAAAGMVE NTSVAGGNYC HRLQFHGGAA  120
SFGLASPGSS VDNGLEIHES NISKPPPSGE ARAAGKKQCR KGSKANKAAS APSPSPNKEQ  180
PQSAAAKVRR ERISERLKVL QDLVPNGTKV DLVTMLEKAI NYVKFLQLQV KVLATDEFWP  240
AQGGKAPELS QVKDALDAIL SSQHPNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085871e-147AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643698.11e-145transcription factor bHLH83
TrEMBLA0A0E0JD960.0A0A0E0JD96_ORYPU; Uncharacterized protein
STRINGOPUNC01G00700.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-46ROOT HAIR DEFECTIVE6