 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC01G00320.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NAC |
| Protein Properties |
Length: 320aa MW: 35986 Da PI: 6.5134 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC01G00320.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177.4 | 3.8e-55 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdee++++yL++kv +++ + +i evd++k+ePwdLp k+ +ekewyf++++d+ky+tg r+nrat++gyWkatgkdke++
OPUNC01G00320.1 14 LPPGFRFHPTDEEIITFYLAPKVVDSRGFCVVAIGEVDLNKCEPWDLPgKAKMIGEKEWYFYCQKDRKYPTGMRTNRATEAGYWKATGKDKEIF 107
79********************99999555467***************544445899************************************* PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
++++ l+g+kktLvfykgrapkg kt+Wvmheyrl
OPUNC01G00320.1 108 RNHHMLIGMKKTLVFYKGRAPKGDKTNWVMHEYRL 142
*********************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MGEQQQQVER QPDLPPGFRF HPTDEEIITF YLAPKVVDSR GFCVVAIGEV DLNKCEPWDL 60
PGKAKMIGEK EWYFYCQKDR KYPTGMRTNR ATEAGYWKAT GKDKEIFRNH HMLIGMKKTL 120
VFYKGRAPKG DKTNWVMHEY RLADASSSSS ADNNNNPMQP RQDDWAVCRI FHKSSGIKKP 180
VPVPMQMQVQ TPANYQQQMI IQVPMQMPSM SDLQMVDDFS TGALQLSPLM APPPPPPAPN 240
SYSTLPGFPL QMNVVNGGGQ QFVGNPPMAM PQYYHQQQME MAAGGFVVGD QVSEPSSLVV 300
SPDADQNNNA TDMDAAIWKY
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-52 | 1 | 179 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-52 | 1 | 179 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-52 | 1 | 179 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-52 | 1 | 179 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-52 | 1 | 179 | 4 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-52 | 1 | 179 | 4 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK107407 | 0.0 | AK107407.1 Oryza sativa Japonica Group cDNA clone:002-127-E05, full insert sequence. |
| GenBank | EU846995 | 0.0 | EU846995.1 Oryza sativa Japonica Group clone KCS259A08 NAC protein mRNA, complete cds. |
