PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

ONIVA12G15960.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 304aa MW: 32970.3 Da PI: 4.644

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G15960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	4.9e-11	232	272	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ +L+ l+P+ +K++ +++Le+Av+Y+k Lq ONIVA12G15960.1 232 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 272 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.205	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	224	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-13	227	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-12	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.19E-13	231	276	No hit	No description
Pfam	PF00010	2.1E-8	232	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0016049	Biological Process	cell growth
GO:0048766	Biological Process	root hair initiation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MEGGGLIADM SWTVFDLPSH SDESEMMAQL FSAFPIHGEE EGHEQLPWFD QSSNPCYYSC 60 NASSTAYSNS NASSIPAPSE YEGYCFSDSN EALGVSSSIA PHDLSMVQVQ GATEFLNVIP 120 NHSLDSFGNG ELGHEDLDSV SGTNKRKQSA EGEFDGQTRG SKCARKAEPK RAKKAKQTVE 180 KDASVAIPNG SCSISDNDSS SSQEVADAGA TSKGKSRAGR GAATDPQSLY ARKRRERINE 240 RLKTLQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DEMWMYAPIA YNGMNIGLDL 300 NIDT

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL954852	0.0	AL954852.5 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619496.1	0.0	transcription factor bHLH85
Swissprot	Q84WK0	6e-51	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A0E0JBT2	0.0	A0A0E0JBT2_ORYNI; Uncharacterized protein
TrEMBL	A2ZM74	0.0	A2ZM74_ORYSI; Uncharacterized protein
TrEMBL	Q2QMV9	0.0	Q2QMV9_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRING	OS12T0589000-00	0.0	(Oryza sativa)
STRING	ONIVA12G15960.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4310	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	2e-52	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]