PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ONIVA12G15170.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 353aa MW: 38305 Da PI: 4.2811

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G15170.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	2	21	4	23
TTTTEEESSHHHHHHHHHHT CS zf-C2H2 4 pdCgksFsrksnLkrHirtH 23 p Cgk F+r+ nL +H t+ ONIVA12G15170.1 2 PVCGKNFKRRGNLLNHELTC 21 58**************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MPVCGKNFKR RGNLLNHELT CKYISDVHPQ TESSGDAQAR KDILGFHIPR QKRTVPTFPA 60 SDYAQGGING ATTSEAKVDR DPEEETDVLE ALLLLREQPA YPGEETFSDG EPGAGNVDDE 120 PAASNPDKVL TMCSDKCSSS PVECYGGDER RVGARAIAGV EEDDLNPNVG CRGVTDCVDE 180 SDVIQKQKRK PDLSVADLRD LVEMKQQNMK ADTNIHDQGH PSVMQMQKNE LGLDLLPHKN 240 SSDHEVPTLS VSSMDDPDGL VSTDTNSDKE TETVNVGIDI NIPEQRESSV TRMQNEKLGL 300 NLLPRNDGSG HEVPILSVSS TDDLNSLIPT DTSSDKDTNS NVADSLGHCP AQE

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MPVCGKNFKR RGNLLNHELT CKYISDVHPQ TESSGDAQAR KDILGFHIPR QKRTVPTFPA  60
SDYAQGGING ATTSEAKVDR DPEEETDVLE ALLLLREQPA YPGEETFSDG EPGAGNVDDE  120
PAASNPDKVL TMCSDKCSSS PVECYGGDER RVGARAIAGV EEDDLNPNVG CRGVTDCVDE  180
SDVIQKQKRK PDLSVADLRD LVEMKQQNMK ADTNIHDQGH PSVMQMQKNE LGLDLLPHKN  240
SSDHEVPTLS VSSMDDPDGL VSTDTNSDKE TETVNVGIDI NIPEQRESSV TRMQNEKLGL  300
NLLPRNDGSG HEVPILSVSS TDDLNSLIPT DTSSDKDTNS NVADSLGHCP AQE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619004.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619005.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619006.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619007.1	0.0	uncharacterized protein LOC4352628
TrEMBL	A0A0E0JBH7	0.0	A0A0E0JBH7_ORYNI; Uncharacterized protein
STRING	ONIVA12G15170.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15758	11	11