 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ONIVA12G12160.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 333aa MW: 35714.5 Da PI: 4.8144 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA12G12160.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.8 | 4.5e-19 | 96 | 149 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++t+eq+++Le+ Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k
ONIVA12G12160.1 96 KRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 149
4579*************98**********************************9 PP
|
| 2 | HD-ZIP_I/II | 122 | 3.1e-39 | 95 | 185 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE d+++L++a+d+l + +++L +++e+Lr+++
ONIVA12G12160.1 95 RKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRTALAADNESLRSQV 185
8*****************9999******************************************************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MCSMDDYSGR LVFSSAGAAP PCSSAGAGGG QMLLFGGHGG FVGGSPVMEE AELRRRRRKR 60
PFLTTTHDEL ELQMEDLVDE LYGVDEQGSS SAAARKRRLT AEQVRALERS FEEEKRKLEP 120
ERKSELARRL GIAPRQVAVW FQNRRARWKT KQLELDFDRL RAAHDELLAG RTALAADNES 180
LRSQVILLTE KLQANGKSPS PSPAPAEQTA VPAAPESAKS FQLEEGRRLY DAAGSTTTTN 240
GGGGGVAMPA ARVAAARAAS NDSPESYFAG ARSPPSSSED DCGGAGSDDD YPSSSVLLPV 300
DATLVGDAFE HAVAATVAAD EEAPLNSWEW FWN
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 52 | 60 | LRRRRRKRP |
| 2 | 53 | 59 | RRRRRKR |
| 3 | 143 | 151 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005702 | 0.0 | AP005702.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0027G10. |
| GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
