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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G03810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 31137.3 Da PI: 5.7682 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.8e-20 | 154 | 203 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae+Aa+a++ a+++++g ONIVA12G03810.1 154 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDGAALRFRG 203 8********.**********7.....337************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.32E-30 | 153 | 213 | No hit | No description |
PROSITE profile | PS51032 | 25.462 | 154 | 211 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-13 | 154 | 203 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 154 | 212 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-36 | 154 | 217 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-33 | 154 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-12 | 155 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-12 | 177 | 193 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MCCTGDEVAG PGEQRRRPLD ADAGGDEGAV ATTSSSLLAA PMLSRRRQAE EMAAMVSALA 60 SVVAGGGGTS LPAKRPAERE PEEGAAVEGV WWSYCSELAA AAAAPSPAAP FPAGYVPSPG 120 QHSPASAAAG DEEELPSPSS ADSSGGGGGT ARKRYRGVRQ RPWGKWAAEI RDPHKAARVW 180 LGTFDTAEDA ARAYDGAALR FRGSRAKLNF PEHATLPPPP TTTTAAAHRC PPPPRTDALL 240 ESQELSPGAG GGDPYSQYAR FLQGSGGDGG EAAARPRGGA SQRTPPATTL LYSFGGEDAS 300 ARYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-24 | 153 | 211 | 4 | 63 | ATERF1 |
3gcc_A | 3e-24 | 153 | 211 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 156 | ARKRYRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107125 | 0.0 | AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619856.1 | 1e-178 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A0E0J783 | 0.0 | A0A0E0J783_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA12G03810.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9894 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 5e-24 | ethylene response factor 110 |