PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G03810.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 304aa    MW: 31137.3 Da    PI: 5.7682
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G03810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.8e-20154203255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a++ a+++++g
  ONIVA12G03810.1 154 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDGAALRFRG 203
                      8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.32E-30153213No hitNo description
PROSITE profilePS5103225.462154211IPR001471AP2/ERF domain
PfamPF008473.2E-13154203IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22154212IPR016177DNA-binding domain
SMARTSM003801.1E-36154217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-33154212IPR001471AP2/ERF domain
PRINTSPR003673.9E-12155166IPR001471AP2/ERF domain
PRINTSPR003673.9E-12177193IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MCCTGDEVAG PGEQRRRPLD ADAGGDEGAV ATTSSSLLAA PMLSRRRQAE EMAAMVSALA  60
SVVAGGGGTS LPAKRPAERE PEEGAAVEGV WWSYCSELAA AAAAPSPAAP FPAGYVPSPG  120
QHSPASAAAG DEEELPSPSS ADSSGGGGGT ARKRYRGVRQ RPWGKWAAEI RDPHKAARVW  180
LGTFDTAEDA ARAYDGAALR FRGSRAKLNF PEHATLPPPP TTTTAAAHRC PPPPRTDALL  240
ESQELSPGAG GGDPYSQYAR FLQGSGGDGG EAAARPRGGA SQRTPPATTL LYSFGGEDAS  300
ARYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-24153211463ATERF1
3gcc_A3e-24153211463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156ARKRYRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071250.0AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.11e-178ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0J7830.0A0A0E0J783_ORYNI; Uncharacterized protein
STRINGONIVA12G03810.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-24ethylene response factor 110