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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G23200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 642aa MW: 72141.6 Da PI: 6.6506 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 347.2 | 2.7e-106 | 264 | 638 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lLl+cA+av+++d + a++lL ++++++s gd+ qRla++f+++L+arla+++s++y++l +++ts +++ l+a++l+ e++ + k+++ ONIVA11G23200.1 264 HNLLLHCAQAVATDDRRSAHELLRQIKQHSSAWGDAGQRLAHCFAQGLEARLAGTGSQVYQSLMSQRTS---VVDFLKAYRLYMEACCCKKVAF 354 689************************************************************999999...********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 + N++I++av+g +++Hi+D+++s+G+QWp Ll++La+R++gpp++RiTg++ p++g + +eetg+rL+++A+elgvpf+f+ ++a++ e ONIVA11G23200.1 355 VFSNKTIYDAVAGRRKLHIVDYGLSYGFQWPGLLRELAARRGGPPEVRITGIDLPQPGfrPDQHIEETGRRLSRYADELGVPFKFHGIAATKKE 448 *********************************************************9*99***************************999*** PP GRAS 188 dleleeLrvkp.gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++ eeL + +E+++V + + +++des++ +s +rdevL +++++P+v+++ + ++++ Fl+rf eal+yy+a fd l+a+++r ONIVA11G23200.1 449 SVRREELGEAEeDEVVVVISLCHFRNVMDESLQEDSsrsPRDEVLGNIRRMRPDVFIHGIMNGAYGATYFLTRFREALYYYAAQFDLLDATVGR 542 *******77766******************9988777779****************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 es+er+ vEr ++gr++ nv+acegaer+er e +++W++r ++aG++++pl+ +++ + +r + + + v+e++ +l+ Wk+r L+++S ONIVA11G23200.1 543 ESHERMLVERDIFGRAALNVIACEGAERVERPEMYKQWQARNQRAGLRQLPLNPQVVRLVLDKVRDKYHKDFVVDEDQRWLLHRWKGRVLYALS 636 **************************************************************999999888*********************** PP GRAS 372 aW 373 W ONIVA11G23200.1 637 TW 638 ** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.885 | 237 | 619 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.3E-104 | 264 | 638 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MATTPEAEES LRFRWPAAEE EFDNDMVLPY ISRLLMEDDV HDHFFYQYPD HPALLRAQQP 60 FAQILASSPS SAAGASSSSS SSDAPPSRPF FDDEAATAKT FPTAAVHSVD HQYSGGLDMV 120 NMAFLKGMEE ANKFLPTNTL LLSTDSSTTL QLQVQGEVVV DGHGMLGGVG GAAAAHAHGA 180 INSKKVNCRD DDLEAGTGRA TKLMAPEPEL EEEGARQMFD EMMLQEHEIC MKGVKQLSLK 240 SKSSSSKKAR GRRTVIHTEP VDLHNLLLHC AQAVATDDRR SAHELLRQIK QHSSAWGDAG 300 QRLAHCFAQG LEARLAGTGS QVYQSLMSQR TSVVDFLKAY RLYMEACCCK KVAFVFSNKT 360 IYDAVAGRRK LHIVDYGLSY GFQWPGLLRE LAARRGGPPE VRITGIDLPQ PGFRPDQHIE 420 ETGRRLSRYA DELGVPFKFH GIAATKKESV RREELGEAEE DEVVVVISLC HFRNVMDESL 480 QEDSSRSPRD EVLGNIRRMR PDVFIHGIMN GAYGATYFLT RFREALYYYA AQFDLLDATV 540 GRESHERMLV ERDIFGRAAL NVIACEGAER VERPEMYKQW QARNQRAGLR QLPLNPQVVR 600 LVLDKVRDKY HKDFVVDEDQ RWLLHRWKGR VLYALSTWVA QH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-41 | 269 | 639 | 24 | 378 | Protein SCARECROW |
5b3h_D | 2e-41 | 269 | 639 | 24 | 378 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616926.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A0E0J5K3 | 0.0 | A0A0E0J5K3_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2ZH27 | 0.0 | A2ZH27_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA11G23200.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-134 | GRAS family protein |