PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 319aa MW: 34803.8 Da PI: 6.6192

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA11G17090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.3e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W+++++ g+ R+ k+c++rw +yl ONIVA11G17090.1 15 KGPWTPEEDIILVSYIQQHGPGNWRSVPENTGLMRCSKSCRLRWTNYL 62 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.642	10	66	IPR017930	Myb domain
SuperFamily	SSF46689	2.27E-22	12	98	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-14	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-16	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-23	16	69	IPR009057	Homeodomain-like
CDD	cd00167	2.04E-12	17	62	No hit	No description
PROSITE profile	PS51294	7.6	67	106	IPR017930	Myb domain
SMART	SM00717	0.14	67	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-11	70	106	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MGRPPCCDNG VGVKKGPWTP EEDIILVSYI QQHGPGNWRS VPENTGLMRC SKSCRLRWTN 60 YLRPGIKRGN FTPHEEGIII HLQALLGNKT DNDIKNYWNT HLKKKVKRLQ QQQQSHPDHH 120 HHHSFQTTPS SSNAAAVATT SPNYYNPNNS NSNSSNYLHN NNHNLESMQS MATAPSNEAT 180 TIPKLFQFQT WMKPSPATTS SAATAAAGSC YKQAMAMQEL QEEQEGSAAA AAMASSIDGV 240 SKDQDYHMCA VISGDDKSSS SEMMTAAAMA GHGEAATTTF SLLENWLLDD MPGQAAMSAA 300 MDGFLEISAG YCCADPIMF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-17	15	106	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-17	15	106	4	105	C-Myb DNA-Binding Domain
1msf_C	2e-17	15	106	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136956	0.0	AC136956.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0038B22, complete sequence.
GenBank	AK110844	0.0	AK110844.1 Oryza sativa Japonica Group cDNA clone:002-172-B09, full insert sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618031.1	0.0	transcription factor MYB30
Swissprot	B3VTV7	2e-75	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A0D3HN19	0.0	A0A0D3HN19_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0J3C3	0.0	A0A0E0J3C3_ORYNI; Uncharacterized protein
STRING	ONIVA11G17090.1	0.0	(Oryza nivara)
STRING	OBART11G17080.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-67	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]