|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
ONIVA11G16880.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
GeBP |
Protein Properties |
Length: 389aa MW: 41295.1 Da PI: 4.8784 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ONIVA11G16880.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 92.3 | 5.5e-29 | 71 | 173 | 2 | 96 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqk 87
lfqrlw++e e+++L+G++df+a++g+ +++ d+ fy+ +++++sf+++ksqlveK+rrLKkK++ + ++ + ++f+++h+
ONIVA11G16880.1 71 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKKYRLCAARmasspHAAAAGFAFRTPHEGA 164
79************************99877778***********************************99996666556677889******** PP
DUF573 88 ifelskkiW 96
i++l++ iW
ONIVA11G16880.1 165 IYDLARHIW 173
********* PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MAADELAASA SHSSSSSPAD EDDEEGTDSD GSNPDHAAAP HAPPEPTAAI PPPPPPPPPQ 60 PGPGAEDSRR LFQRLWTDEE ELLILRGFLD FTARRGTTFA SHQYDTGPFY DEIRRRLSFD 120 FTKSQLVEKL RRLKKKYRLC AARMASSPHA AAAGFAFRTP HEGAIYDLAR HIWPPALKRD 180 GTASDDDDIN PAAAAAAAAA VTTPVAMEDG FGGSAPTPTP TPRGRGGRRV RRRMAQEQEA 240 AALPSAPALT STDGAHQEPL VAAMENSFPQ ITQLPPVSET SPMPVTANGA NEEAVRSVLS 300 PLLKEFITSF AVAGQTGPGM GLNMGFGGAG LNADIAGLGF GIAALNPGVP GTDRWRQQQI 360 LELEVYLKRI ELVREQVTAA LDELRSSEG
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT3G04930.2 | 4e-19 | DNA-binding storekeeper protein-related transcriptional regulator |