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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | ONIVA11G15890.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | B3 | ||||||||
| Protein Properties | Length: 1357aa MW: 152935 Da PI: 6.0858 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 56.6 | 4.7e-18 | 74 | 158 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
f+kv tpsdv+++grlv+p ++ae + +++e++ l++ed g+ W++ + r++s lt GW++F + n+L++gD+v F++
ONIVA11G15890.1 74 FDKVVTPSDVGNLGRLVIPWQHAECYfprdvPANEREGVVLRFEDDAGKPWRFLY--RGSS----LTLGWSHFFRKNRLDAGDMVSFYRGA 158
89*********************888***99778899******************..9999....***********************543 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 7.2E-26 | 65 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 8.5E-21 | 71 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 9.27E-16 | 72 | 156 | No hit | No description |
| SMART | SM01019 | 1.6E-9 | 74 | 170 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 6.9E-15 | 74 | 160 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.053 | 74 | 172 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:3.80.10.10 | 8.7E-26 | 353 | 531 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 2.75E-28 | 356 | 527 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52540 | 4.64E-38 | 543 | 798 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 4.5E-4 | 571 | 626 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 4.7E-33 | 574 | 826 | IPR002182 | NB-ARC |
| PRINTS | PR00364 | 2.3E-8 | 578 | 593 | No hit | No description |
| PRINTS | PR00364 | 2.3E-8 | 648 | 662 | No hit | No description |
| PRINTS | PR00364 | 2.3E-8 | 745 | 759 | No hit | No description |
| SuperFamily | SSF52058 | 5.61E-35 | 861 | 1084 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 7.5E-14 | 940 | 1070 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 5.61E-35 | 1124 | 1336 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 1.6E-10 | 1128 | 1336 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 2.3E-8 | 1302 | 1318 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1357 aa Download sequence Send to blast |
MEPGSSSREG EQQEPANERL TATGGGGGGG GGSPVSDQEL SDGEEVSDGE YQAGDDFSGY 60 AVRGRGFVEK EHIFDKVVTP SDVGNLGRLV IPWQHAECYF PRDVPANERE GVVLRFEDDA 120 GKPWRFLYRG SSLTLGWSHF FRKNRLDAGD MVSFYRGASE ATRDRLFIHS KRRMHILPTL 180 GYSDPQVHIN RLFQLLVRVR TMVSSFGKSG SPSPPNSPLP TVQNFTYKAL KDCLQDLHYY 240 SLLSMMGRNH KSQSTSAKIR DTIPTLDALI QLRSLSDPVF RIPAAATSHC ILLCRGVLGI 300 MGFLCSDENM KEDHRMLQVP AFDDLNYSAQ VKITRMKEQT MPSSLADPIY LLPTAIRNLL 360 YLDLSNCSDI VQLPPSLGSS LHMLSALNLS CCYSLRALPD SLVCLYDLQI LLLSFCHNLQ 420 NLPVSFGDLS NLRLLDLSGC RSLRLFPSSF VNLGSLENLN LSDCIRLMGI PQNFEDLQKL 480 EYLNFAGCYR VDLPVYCLTN LVNLKCLTLS NHTDIKDFPY SFTDLKRHLY LSRWWKYNRV 540 HTQCNLKSYR CHQQRIINSL LSDGSDEGDI TSEQSLTSIC IFGESGTGKT ELLHEIYNDQ 600 KILEGFHLRI WINMCDKKRL LEKIIEFTAC AYCYDAPSSI LEETVREELN GKRFLLVLND 660 ADIENQCFWT DVWKVSNVGA AGSALIVTTR SKEVASLFGA MKPYYMNPLS KEECFMVFQE 720 HAGCGFDINN DHELTKVGWK IVEKCGGNLL CMKALSGLLW HSETALSEID SLVGGIVPAL 780 RLCYDLLPSH LKQCFKFCSL FPKDYVFVKH HIIQLWISQG FVYPEEDSQP EDTGLQYFNE 840 FLCRSFFQHC PFSNDHEDKF VMHELFHDLA CSVSKDESFS SEEPFFSLPE NICHLSLVIS 900 DSNTVVLTKE HRHLQSLMVV RRSATEYSSS FVPLLKILGL NDLLMKCGFL RALNLSCTTI 960 VDLPGSIGRM KHLRFLAMNN TKIKSLPTEI GQLNTLQTLE LKDCCCLIEL PESTKNLMKL 1020 RHLDVQKEPG NIHVGMPSGL GQLTDLQTLT VFNIGDDLSH CSIRDLKNLS GLRGHVHITG 1080 LQNITAGDDA KEANLVGKQF LQALTLEWCC SSEEMEDESD KEIANQVLQN LQPNTSIQEL 1140 AIQNYPGNSF PNWIKDSGLC MLVSITIDNS QDCNEIPYLG DLPCLKFLFI QKMYAVENFG 1200 QRSNSLTTDG KHAPGFPSLE ILNLWEMYSL QFWNGTRYGD FPQLRGLSIS RCPKLSNLPP 1260 LISLLYLSFH CGDQLPTLSE FPSLKSLKIE GFQKLKSVSF CPEMPLLQKL EISDCKELVS 1320 IDAPLLSVSN LKVVRCPKLH FGGSWLEGCL MWEEFKR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 5e-44 | 571 | 1167 | 177 | 771 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 22 | 32 | TGGGGGGGGGS |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK289024 | 0.0 | AK289024.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence. | |||
| GenBank | AK318581 | 0.0 | AK318581.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015644837.1 | 0.0 | uncharacterized protein LOC4342906 isoform X1 | ||||
| TrEMBL | A0A0E0J2W6 | 0.0 | A0A0E0J2W6_ORYNI; Uncharacterized protein | ||||
| STRING | ONIVA11G15890.1 | 0.0 | (Oryza nivara) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP12577 | 12 | 16 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G46870.1 | 4e-29 | B3 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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