 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
ONIVA11G13750.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
SBP |
| Protein Properties |
Length: 348aa MW: 36634.2 Da PI: 10.6532 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ONIVA11G13750.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 42.9 | 1.3e-13 | 136 | 165 | 49 | 78 |
EEETTT--SS--S-STTTT-------S--- CS
SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78
fh+l efD++k+sCr+rL++hn+rrrk+q+
ONIVA11G13750.2 136 FHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 165
9**************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MEWAAAATKA ASWGMAVAAA AAAADDAGPT MLSFAGPSSS SSSPDAAAAA AAAAALHDFS 60
VRARPAAAAP ATRRALGRRV PVGPQPVPRL PPPPQGLRGP RQDAGGRRRR PGAALLPAMQ 120
PYRFSVHVLN MLRAIFHNLA EFDDGKKSCR KRLDGHNRRR RKPQHDALNP RSFLPYHQAN 180
QFSVYPQTFP IADQNADALM RPLDRHPPFS ISFSGTFREP KQFPFMQDGG SGLGAARHDL 240
LRPFSSPEDG ANITTTRSAC NGVPHGLDPE CALSLLSSSL HPSPAAGISS ATAPPQFAPS 300
SFSRIAASSQ AVTTAFASDG GSVAGDHVLV PAVTYEDPSQ AMPFSWQV
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 145 | 162 | KKSCRKRLDGHNRRRRKP |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC133608 | 0.0 | AC133608.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0085G12, complete sequence. |
| GenBank | AC135569 | 0.0 | AC135569.6 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0018F17, complete sequence. |
| GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
